# HG changeset patch
# User iracooke
# Date 1445388002 14400
# Node ID e20c4df2bc280c2df9e9aab6be701072784b7edc
# Parent 10465e20d9a272504ce32a89bf74ff9bd8884147
planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/sixframe-translate/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
diff -r 10465e20d9a2 -r e20c4df2bc28 repository_dependencies.xml
--- a/repository_dependencies.xml Thu Mar 26 19:56:34 2015 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
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diff -r 10465e20d9a2 -r e20c4df2bc28 sixframe_translate.xml
--- a/sixframe_translate.xml Thu Mar 26 19:56:34 2015 -0400
+++ b/sixframe_translate.xml Tue Oct 20 20:40:02 2015 -0400
@@ -1,55 +1,55 @@
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- iracooke/protk-1.4.1
- protk
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- Translates DNA/RNA to protein
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- sixframe.rb $fasta_file -o $output $strip_header $coords
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+ Translates DNA/RNA to protein
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+ iracooke/protk-1.4.3
+ protk
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+ sixframe.rb
+ $fasta_file
+ -o $output
+ $strip_header
+ $coords
+ $peptideshaker
+ --min-len $minlen
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+ #if $gffoutput:
+ --gff
+ #end if
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**What it does**
Generates 6 frame translations suitable for proteogenomics workflows
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-**References**
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diff -r 10465e20d9a2 -r e20c4df2bc28 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Tue Oct 20 20:40:02 2015 -0400
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