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annotate tool-data/pepxml_databases.loc.sample @ 8:d19a95abf2e4

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author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:19:01 -0500
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1 #This file lists the names of protein databases installed locally in protk.
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2 # These are used by omssa and x!tandem as well as the "mascot to pepxml" tool
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3 # In order to combine search results with Interprophet searches must be run against an identical database
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4 #
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5 # Entries should follow the be structured as follows
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6 # Display_name omssa_tandem_dbname dbkey
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7 #
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8 #
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9 Swissprot spall_ spall spall_
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10 Combined PlasmboDB (falciparum) and Swissprot Human plasmodb_pfalciparum_sphuman_ plasmodb_pfalciparum_sphuman plasmodb_pfalciparum_sphuman_
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11 Swissprot Human sphuman_ sphuman sphuman_
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12 Combined Swissprot/TRembl Human sptrhuman_ sptrhuman sptrhuman_
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13 Swissprot Mouse spmouse_ spmouse spmouse_