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comparison interprophet.xml @ 16:1b86e378de37 draft

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Fix tabular outputs. Export XML_ONLY variable
author iracooke
date Mon, 26 Oct 2015 20:40:34 -0400
parents 0746a2ae9e04
children
comparison
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15:0746a2ae9e04 16:1b86e378de37
5 <requirement type="package" version="1.4.3">protk</requirement> 5 <requirement type="package" version="1.4.3">protk</requirement>
6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
7 </requirements> 7 </requirements>
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 export XML_ONLY="true";
11
10 interprophet.rb --galaxy 12 interprophet.rb --galaxy
11 #if str( $input_type.type ) == "files": 13 #if str( $input_type.type ) == "files":
12 #for $pepxml_file in $input_type.pepxml_files: 14 #for $pepxml_file in $input_type.pepxml_files:
13 ${pepxml_file} 15 ${pepxml_file}
14 #end for 16 #end for