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comparison peptide_prophet.xml @ 16:1b86e378de37 draft

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Fix tabular outputs. Export XML_ONLY variable
author iracooke
date Mon, 26 Oct 2015 20:40:34 -0400
parents 0746a2ae9e04
children 868e75fc0f70
comparison
equal deleted inserted replaced
15:0746a2ae9e04 16:1b86e378de37
4 <container type="docker">iracooke/protk-1.4.3</container> 4 <container type="docker">iracooke/protk-1.4.3</container>
5 <requirement type="package" version="1.4.3">protk</requirement> 5 <requirement type="package" version="1.4.3">protk</requirement>
6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
7 </requirements> 7 </requirements>
8 <command> 8 <command>
9 # This should be in the tpp_package.
10 # A hack for now
11 export XML_ONLY="true";
12
9 peptide_prophet.rb 13 peptide_prophet.rb
10 --galaxy $input_file 14 --galaxy $input_file
11 -o peptide_prophet_output.pep.xml 15 -o peptide_prophet_output.pep.xml
12 -r 16 -r
13 $glyco 17 $glyco