Mercurial > repos > iracooke > tpp_prophets

comparison peptide_prophet_wrapper.rb @ 7:3f0cb90824f1

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author iracooke
date Tue, 05 Mar 2013 00:28:22 -0500
parents a67a5d30bb80
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6:7005346b534d 7:3f0cb90824f1
16 actual_input_path_string="#{wd}/#{original_input_path.basename}.pep.xml" 16 actual_input_path_string="#{wd}/#{original_input_path.basename}.pep.xml"
17 full_tmp_output_path_string="#{wd}/peptide_prophet_output.pep.xml" 17 full_tmp_output_path_string="#{wd}/peptide_prophet_output.pep.xml"
18 18
19 cmd = "ln -s #{original_input_file} #{actual_input_path_string};" 19 cmd = "ln -s #{original_input_file} #{actual_input_path_string};"
20 20
21 cmd << "rvm 1.9.3@protk-1.1.9 do peptide_prophet.rb" 21 cmd << "rvm 1.9.3@protk-1.2.0 do peptide_prophet.rb"
22 22
23 23
24 ARGV[0]="#{actual_input_path_string}" 24 ARGV[0]="#{actual_input_path_string}"
25 25
26 ARGV.each { |a| 26 ARGV.each { |a|