Mercurial > repos > iracooke > tpp_prophets

comparison protein_prophet_wrapper.rb @ 7:3f0cb90824f1

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author iracooke
date Tue, 05 Mar 2013 00:28:22 -0500
parents 25261529840c
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6:7005346b534d 7:3f0cb90824f1
15 original_input_path=Pathname.new("#{original_input_file}") 15 original_input_path=Pathname.new("#{original_input_file}")
16 actual_input_path_string="#{wd}/#{original_input_path.basename}.pep.xml" 16 actual_input_path_string="#{wd}/#{original_input_path.basename}.pep.xml"
17 17
18 cmd = "ln -s #{original_input_file} #{actual_input_path_string};" 18 cmd = "ln -s #{original_input_file} #{actual_input_path_string};"
19 19
20 cmd << "rvm 1.9.3@protk-1.1.9 do protein_prophet.rb" 20 cmd << "rvm 1.9.3@protk-1.2.0 do protein_prophet.rb"
21 21
22 22
23 ARGV[0]="#{actual_input_path_string}" 23 ARGV[0]="#{actual_input_path_string}"
24 24
25 ARGV.each { |a| 25 ARGV.each { |a|