Mercurial > repos > iracooke > tpp_prophets
comparison pepxml_to_table.xml @ 4:a67a5d30bb80
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| author | iracooke |
|---|---|
| date | Mon, 04 Mar 2013 19:04:16 -0500 |
| parents | |
| children | 3f0cb90824f1 |
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| 3:4c2e97f928d7 | 4:a67a5d30bb80 |
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| 1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0"> | |
| 2 | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.1.9">galaxy_protk</requirement> | |
| 5 </requirements> | |
| 6 | |
| 7 | |
| 8 | |
| 9 <description>Converts a pepXML file to a tab delimited text file</description> | |
| 10 | |
| 11 | |
| 12 <!-- Note .. the input file is assumed to be the first argument --> | |
| 13 <command>rvm 1.9.3@protk-1.1.9 do pepxml_to_table.rb $input_file -o $output</command> | |
| 14 | |
| 15 | |
| 16 <inputs> | |
| 17 | |
| 18 <param name="input_file" type="data" format="pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/> | |
| 19 | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" /> | |
| 23 </outputs> | |
| 24 | |
| 25 <help> | |
| 26 Convert a pepXML file to Tab delimited text | |
| 27 </help> | |
| 28 | |
| 29 </tool> |