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comparison protxml_to_table.xml @ 9:c04896f31ff7

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Added bash wrapper scripts and protxml to table
author Ira Cooke <iracooke@gmail.com>
date Mon, 10 Jun 2013 04:58:03 -0500
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8:d19a95abf2e4 9:c04896f31ff7
1 <tool id="protxml_to_table_1" name="ProtXML to Table" version="1.0.1">
2 <requirements>
3 <requirement type="package" version="1.2.2">galaxy_protk</requirement>
4 </requirements>
5
6 <description>Converts a ProtXML file to a table</description>
7
8 <command>
9 rvm 1.9.3@protk-1.2.2 do protxml_to_table.rb
10
11 $input_file
12 -o $output
13 </command>
14
15 <inputs>
16
17 <param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/>
18
19 </inputs>
20
21
22 <outputs>
23 <data format="tabular" name="output" />
24 </outputs>
25
26
27 <help>
28
29 **What it does**
30
31 Converts a ProtXML file to a tab separated table
32
33 </help>
34
35 </tool>