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comparison pepxml_to_table.xml @ 8:d19a95abf2e4

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Update
author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:19:01 -0500
parents 3f0cb90824f1
children
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7:3f0cb90824f1 8:d19a95abf2e4
1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.1"> 1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.1">
2 2
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.0">galaxy_protk</requirement> 4 <requirement type="package" version="1.2.2">galaxy_protk</requirement>
5 </requirements> 5 </requirements>
6 6
7 7
8 8
9 <description>Converts a pepXML file to a tab delimited text file</description> 9 <description>Converts a pepXML file to a tab delimited text file</description>
10 10
11 11
12 <!-- Note .. the input file is assumed to be the first argument --> 12 <!-- Note .. the input file is assumed to be the first argument -->
13 <command>rvm 1.9.3@protk-1.2.0 do pepxml_to_table.rb $input_file -o $output</command> 13 <command>rvm 1.9.3@protk-1.2.2 do pepxml_to_table.rb $input_file -o $output</command>
14 14
15 15
16 <inputs> 16 <inputs>
17 17
18 <param name="input_file" type="data" format="pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/> 18 <param name="input_file" type="data" format="pepxml,raw_pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/>
19 19
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" /> 22 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
23 </outputs> 23 </outputs>