Mercurial > repos > iracooke > tpp_prophets
comparison README.rst @ 14:d90c8bc10a9c draft
Docker support and update for protk 1.4
| author | iracooke |
|---|---|
| date | Thu, 26 Mar 2015 19:55:19 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 13:b793fe628648 | 14:d90c8bc10a9c |
|---|---|
| 1 TPP Prophets | |
| 2 ============ | |
| 3 | |
| 4 Galaxy wrappers for Peptide Prophet, iProphet and Protein Prophet | |
| 5 | |
| 6 Requirements | |
| 7 ------------ | |
| 8 | |
| 9 This package uses protk_ and the trans_proteomic_pipeline_ which need to be present in order for the tool to work. | |
| 10 | |
| 11 .. _protk: https://github.com/iracooke/protk | |
| 12 .. _trans_proteomic_pipeline: http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP | |
| 13 | |
| 14 There are two ways you can satify these dependencies (choose one): | |
| 15 | |
| 16 1. **Manual Install:** Details on how to install protk_ and the trans_proteomic_pipeline_ manually are available here_. | |
| 17 | |
| 18 2. **Use Docker:** These tools are designed to run inside a docker_ container. If your galaxy supports `running tools within a docker container`__ you don't need to worry about dependencies. Simply install and things should just work. The docker container itself is versioned and new versions of this tool will automatically download an update to the container if needed. | |
| 19 | |
| 20 .. _docker: https://www.docker.com/ | |
| 21 .. _here: https://github.com/iracooke/protk/#galaxy-integration | |
| 22 .. _container: https://wiki.galaxyproject.org/Admin/Tools/Docker | |
| 23 __ container_ | |
| 24 | |
| 25 | |
| 26 Further Info | |
| 27 ------------ | |
| 28 | |
| 29 The source code for this tool and other protk galaxy tools is on github_. Please visit the github page to contribute to the project or to `report an issue`__ | |
| 30 | |
| 31 .. _github: https://github.com/iracooke/protk-galaxytools | |
| 32 .. _issue: https://github.com/iracooke/protk-galaxytools/issues | |
| 33 __ issue_ | |
| 34 | |
| 35 Please visit the TPP__ website for details of the various Prophet tools | |
| 36 | |
| 37 __ trans_proteomic_pipeline_ |