Mercurial > repos > iracooke > tpp_prophets
comparison test-data/mr176-BSA100fmole_BA3_01_8168.d_tandem.pep.xml @ 14:d90c8bc10a9c draft
Docker support and update for protk 1.4
author | iracooke |
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date | Thu, 26 Mar 2015 19:55:19 -0400 |
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13:b793fe628648 | 14:d90c8bc10a9c |
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1 <?xml version="1.0" encoding="UTF-8"?> | |
2 <?xml-stylesheet type="text/xsl" href="pepXML_std.xsl"?> | |
3 <msms_pipeline_analysis date="2014-06-22T13:57:05" summary_xml="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem.pep.xml" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd"> | |
4 <msms_run_summary base_name="mr176-BSA100fmole_BA3_01_8168.d_tandem" search_engine="X! Tandem" raw_data_type="raw" raw_data=".?"> | |
5 <sample_enzyme name="trypsin"> | |
6 <specificity cut="KR" no_cut="P" sense="C"/> | |
7 </sample_enzyme> | |
8 <search_summary base_name="mr176-BSA100fmole_BA3_01_8168.d_tandem" search_engine="X! Tandem" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1"> | |
9 <search_database local_path="/Users/icooke/Desktop/iptest/AASequences.fasta" type="AA"/> | |
10 <enzymatic_search_constraint enzyme="trypsin" max_num_internal_cleavages="2" min_number_termini="1" /> | |
11 <aminoacid_modification aminoacid="E" massdiff="-18.0106" mass="111.0320" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification--> | |
12 <aminoacid_modification aminoacid="M" massdiff="15.9949" mass="147.0354" variable="Y" /> | |
13 <aminoacid_modification aminoacid="Q" massdiff="-17.0265" mass="111.0321" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification--> | |
14 <terminal_modification terminus="n" massdiff="42.0106" mass="43.0184" protein_terminus="N" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification--> | |
15 | |
16 <!-- Input parameters --> | |
17 <parameter name="list path, default parameters" value="/Users/icooke/.rvm/gems/ruby-2.0.0-p353/gems/protk-1.2.6.pre6/lib/protk/data/tandem_isb_native_defaults.xml"/> | |
18 <parameter name="list path, taxonomy information" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem.taxonomy.xml"/> | |
19 <parameter name="output, histogram column width" value="30"/> | |
20 <parameter name="output, histograms" value="no"/> | |
21 <parameter name="output, log path" value=""/> | |
22 <parameter name="output, maximum valid expectation value" value="0.1"/> | |
23 <parameter name="output, message" value="1234567890"/> | |
24 <parameter name="output, one sequence copy" value="no"/> | |
25 <parameter name="output, parameters" value="yes"/> | |
26 <parameter name="output, path" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem"/> | |
27 <parameter name="output, path hashing" value="no"/> | |
28 <parameter name="output, performance" value="yes"/> | |
29 <parameter name="output, proteins" value="yes"/> | |
30 <parameter name="output, results" value="all"/> | |
31 <parameter name="output, sequence path" value=""/> | |
32 <parameter name="output, sequences" value="no"/> | |
33 <parameter name="output, sort results by" value="spectrum"/> | |
34 <parameter name="output, spectra" value="no"/> | |
35 <parameter name="output, xsl path" value="tandem-style.xsl"/> | |
36 <parameter name="protein, C-terminal residue modification mass" value=""/> | |
37 <parameter name="protein, N-terminal residue modification mass" value=""/> | |
38 <parameter name="protein, cleavage C-terminal mass change" value=""/> | |
39 <parameter name="protein, cleavage N-terminal mass change" value=""/> | |
40 <parameter name="protein, cleavage semi" value="yes"/> | |
41 <parameter name="protein, cleavage site" value="[RK]|{P}"/> | |
42 <parameter name="protein, homolog management" value="no"/> | |
43 <parameter name="protein, modified residue mass file" value=""/> | |
44 <parameter name="protein, quick acetyl" value="yes"/> | |
45 <parameter name="protein, taxon" value="AASequences.fasta"/> | |
46 <parameter name="refine" value="no"/> | |
47 <parameter name="refine, maximum valid expectation value" value="0.1"/> | |
48 <parameter name="refine, sequence path" value=""/> | |
49 <parameter name="refine, spectrum synthesis" value="yes"/> | |
50 <parameter name="residue, modification mass" value=""/> | |
51 <parameter name="residue, potential modification mass" value="15.994915@M"/> | |
52 <parameter name="residue, potential modification motif" value=""/> | |
53 <parameter name="scoring, a ions" value="no"/> | |
54 <parameter name="scoring, b ions" value="yes"/> | |
55 <parameter name="scoring, c ions" value="no"/> | |
56 <parameter name="scoring, cyclic permutation" value="no"/> | |
57 <parameter name="scoring, include reverse" value="no"/> | |
58 <parameter name="scoring, maximum missed cleavage sites" value="2"/> | |
59 <parameter name="scoring, minimum ion count" value="4"/> | |
60 <parameter name="scoring, x ions" value="no"/> | |
61 <parameter name="scoring, y ions" value="yes"/> | |
62 <parameter name="scoring, z ions" value="no"/> | |
63 <parameter name="spectrum, dynamic range" value="100.0"/> | |
64 <parameter name="spectrum, fragment mass type" value="monoisotopic"/> | |
65 <parameter name="spectrum, fragment monoisotopic mass error" value="0.4"/> | |
66 <parameter name="spectrum, fragment monoisotopic mass error units" value="Daltons"/> | |
67 <parameter name="spectrum, maximum parent charge" value="5"/> | |
68 <parameter name="spectrum, minimum fragment mz" value="50.0"/> | |
69 <parameter name="spectrum, minimum parent m+h" value="600.0"/> | |
70 <parameter name="spectrum, minimum peaks" value="6"/> | |
71 <parameter name="spectrum, parent monoisotopic mass error minus" value="100.0"/> | |
72 <parameter name="spectrum, parent monoisotopic mass error plus" value="100.0"/> | |
73 <parameter name="spectrum, parent monoisotopic mass error units" value="Daltons"/> | |
74 <parameter name="spectrum, parent monoisotopic mass isotope error" value="no"/> | |
75 <parameter name="spectrum, path" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d.mgf"/> | |
76 <parameter name="spectrum, sequence batch size" value="1000"/> | |
77 <parameter name="spectrum, threads" value="1"/> | |
78 <parameter name="spectrum, total peaks" value="50"/> | |
79 <parameter name="spectrum, use conditioning" value="yes"/> | |
80 <parameter name="spectrum, use noise suppression" value="no"/> | |
81 <!-- Unused input parameters --> | |
82 <parameter name="protein, use minimal annotations" value="yes"/> | |
83 <parameter name="refine, modification mass" value=""/> | |
84 <parameter name="refine, point mutations" value="no"/> | |
85 <parameter name="refine, potential C-terminus modifications" value=""/> | |
86 <parameter name="refine, potential N-terminus modifications" value=""/> | |
87 <parameter name="refine, potential modification mass" value=""/> | |
88 <parameter name="refine, potential modification motif" value=""/> | |
89 <parameter name="refine, tic percent" value="10"/> | |
90 <parameter name="refine, unanticipated cleavage" value="no"/> | |
91 <parameter name="refine, use potential modifications for full refinement" value="no"/> | |
92 <parameter name="scoring, pluggable scoring" value="no"/> | |
93 <parameter name="spectrum, maximum parent m+h" value="4000.0"/> | |
94 <!-- Performance parameters --> | |
95 <parameter name="list path, sequence source #1" value="/Users/icooke/Desktop/iptest/AASequences.fasta"/> | |
96 <parameter name="list path, sequence source description #1" value="no description"/> | |
97 <parameter name="modelling, duplicate peptide ids" value="0"/> | |
98 <parameter name="modelling, duplicate proteins" value="0"/> | |
99 <parameter name="modelling, total peptides used" value="542390"/> | |
100 <parameter name="modelling, total proteins used" value="33"/> | |
101 <parameter name="modelling, total spectra used" value="118"/> | |
102 <parameter name="process, start time" value="2014:06:22:13:57:05"/> | |
103 <parameter name="process, version" value="X! Tandem Sledgehammer (2013.09.01.1)"/> | |
104 <parameter name="quality values" value="12 10 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0"/> | |
105 <parameter name="refining, # input models" value="0"/> | |
106 <parameter name="refining, # input spectra" value="0"/> | |
107 <parameter name="refining, # partial cleavage" value="0"/> | |
108 <parameter name="refining, # point mutations" value="0"/> | |
109 <parameter name="refining, # potential C-terminii" value="0"/> | |
110 <parameter name="refining, # potential N-terminii" value="0"/> | |
111 <parameter name="refining, # unanticipated cleavage" value="0"/> | |
112 <parameter name="timing, initial modelling total (sec)" value="0.63"/> | |
113 <parameter name="timing, initial modelling/spectrum (sec)" value="0.0053"/> | |
114 <parameter name="timing, load sequence models (sec)" value="0.00"/> | |
115 <parameter name="timing, refinement/spectrum (sec)" value="0.0000"/> | |
116 </search_summary> | |
117 | |
118 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00001.00001.2" start_scan="1" end_scan="1" precursor_neutral_mass="1442.6899" assumed_charge="2" index="1"> | |
119 <search_result> | |
120 <search_hit hit_rank="1" peptide="DLIRQQCYLFN" peptide_prev_aa="K" peptide_next_aa="H" protein="sp|Q26604|SMOX5_SCHMA" protein_descr="Homeobox protein SMOX-5 OS=Schistosoma mansoni GN=SMOX-5 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="20" calc_neutral_pep_mass="1393.6817" massdiff="49.008" num_tol_term="1" num_missed_cleavages="1" is_rejected="0"> | |
121 <search_score name="hyperscore" value="19.0"/> | |
122 <search_score name="nextscore" value="19.0"/> | |
123 <search_score name="bscore" value="3.2"/> | |
124 <search_score name="yscore" value="10.7"/> | |
125 <search_score name="cscore" value="0"/> | |
126 <search_score name="zscore" value="0"/> | |
127 <search_score name="ascore" value="0"/> | |
128 <search_score name="xscore" value="0"/> | |
129 <search_score name="expect" value="2.1"/> | |
130 </search_hit> | |
131 </search_result> | |
132 </spectrum_query> | |
133 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00002.00002.3" start_scan="2" end_scan="2" precursor_neutral_mass="1248.6649" assumed_charge="3" index="2"> | |
134 <search_result> | |
135 <search_hit hit_rank="1" peptide="ANTNNYAPKSSR" peptide_prev_aa="A" peptide_next_aa="N" protein="sp|Q04787|BSH_DROME" protein_descr="Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="44" calc_neutral_pep_mass="1303.6267" massdiff="-54.962" num_tol_term="1" num_missed_cleavages="1" is_rejected="0"> | |
136 <search_score name="hyperscore" value="20.6"/> | |
137 <search_score name="nextscore" value="20.6"/> | |
138 <search_score name="bscore" value="9.2"/> | |
139 <search_score name="yscore" value="10.3"/> | |
140 <search_score name="cscore" value="0"/> | |
141 <search_score name="zscore" value="0"/> | |
142 <search_score name="ascore" value="0"/> | |
143 <search_score name="xscore" value="0"/> | |
144 <search_score name="expect" value="2.8"/> | |
145 </search_hit> | |
146 </search_result> | |
147 </spectrum_query> | |
148 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00003.00003.2" start_scan="3" end_scan="3" precursor_neutral_mass="1398.7025" assumed_charge="2" index="3"> | |
149 <search_result> | |
150 <search_hit hit_rank="1" peptide="NRAVFSLMQRR" peptide_prev_aa="W" peptide_next_aa="G" protein="sp|P28468|HOX1_HALRO" protein_descr="Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="1374.7307" massdiff="23.972" num_tol_term="1" num_missed_cleavages="1" is_rejected="0"> | |
151 <modification_info> | |
152 <mod_aminoacid_mass position="8" mass="147.0354" /> | |
153 </modification_info> | |
154 <search_score name="hyperscore" value="19.6"/> | |
155 <search_score name="nextscore" value="19.1"/> | |
156 <search_score name="bscore" value="2.7"/> | |
157 <search_score name="yscore" value="10"/> | |
158 <search_score name="cscore" value="0"/> | |
159 <search_score name="zscore" value="0"/> | |
160 <search_score name="ascore" value="0"/> | |
161 <search_score name="xscore" value="0"/> | |
162 <search_score name="expect" value="0.32"/> | |
163 </search_hit> | |
164 </search_result> | |
165 </spectrum_query> | |
166 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00004.00004.2" start_scan="4" end_scan="4" precursor_neutral_mass="921.5162" assumed_charge="2" index="4"> | |
167 <search_result> | |
168 <search_hit hit_rank="1" peptide="YLASAERA" peptide_prev_aa="K" peptide_next_aa="A" protein="sp|O93367|TLX3_CHICK" protein_descr="T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="14" calc_neutral_pep_mass="861.4347" massdiff="60.081" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
169 <search_score name="hyperscore" value="19.5"/> | |
170 <search_score name="nextscore" value="18.5"/> | |
171 <search_score name="bscore" value="5.9"/> | |
172 <search_score name="yscore" value="9.8"/> | |
173 <search_score name="cscore" value="0"/> | |
174 <search_score name="zscore" value="0"/> | |
175 <search_score name="ascore" value="0"/> | |
176 <search_score name="xscore" value="0"/> | |
177 <search_score name="expect" value="1.8"/> | |
178 </search_hit> | |
179 </search_result> | |
180 </spectrum_query> | |
181 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00005.00005.2" start_scan="5" end_scan="5" precursor_neutral_mass="1501.6666" assumed_charge="2" index="5"> | |
182 <search_result> | |
183 <search_hit hit_rank="1" peptide="FKTTRYLSVCER" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|P22807|SLOU_DROME" protein_descr="Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="22" calc_neutral_pep_mass="1483.7607" massdiff="17.906" num_tol_term="2" num_missed_cleavages="2" is_rejected="0"> | |
184 <search_score name="hyperscore" value="22.1"/> | |
185 <search_score name="nextscore" value="19.8"/> | |
186 <search_score name="bscore" value="10.5"/> | |
187 <search_score name="yscore" value="8.5"/> | |
188 <search_score name="cscore" value="0"/> | |
189 <search_score name="zscore" value="0"/> | |
190 <search_score name="ascore" value="0"/> | |
191 <search_score name="xscore" value="0"/> | |
192 <search_score name="expect" value="1.3"/> | |
193 </search_hit> | |
194 </search_result> | |
195 </spectrum_query> | |
196 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00006.00006.3" start_scan="6" end_scan="6" precursor_neutral_mass="1748.7227" assumed_charge="3" index="6"> | |
197 <search_result> | |
198 <search_hit hit_rank="1" peptide="RQTAVGLELLAEAGNYSA" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|O88181|BARH2_RAT" protein_descr="BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="11" tot_num_ions="68" calc_neutral_pep_mass="1843.9427" massdiff="-95.220" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
199 <search_score name="hyperscore" value="21.5"/> | |
200 <search_score name="nextscore" value="21.1"/> | |
201 <search_score name="bscore" value="8.5"/> | |
202 <search_score name="yscore" value="9.8"/> | |
203 <search_score name="cscore" value="0"/> | |
204 <search_score name="zscore" value="0"/> | |
205 <search_score name="ascore" value="0"/> | |
206 <search_score name="xscore" value="0"/> | |
207 <search_score name="expect" value="2.5"/> | |
208 </search_hit> | |
209 </search_result> | |
210 </spectrum_query> | |
211 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00007.00007.2" start_scan="7" end_scan="7" precursor_neutral_mass="1160.4761" assumed_charge="2" index="7"> | |
212 <search_result> | |
213 <search_hit hit_rank="1" peptide="EEPETEVRM" peptide_prev_aa="K" peptide_next_aa="V" protein="sp|Q01702|DLX3B_DANRE" protein_descr="Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="16" calc_neutral_pep_mass="1100.4807" massdiff="59.995" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
214 <search_score name="hyperscore" value="23.1"/> | |
215 <search_score name="nextscore" value="23.1"/> | |
216 <search_score name="bscore" value="0"/> | |
217 <search_score name="yscore" value="11.7"/> | |
218 <search_score name="cscore" value="0"/> | |
219 <search_score name="zscore" value="0"/> | |
220 <search_score name="ascore" value="0"/> | |
221 <search_score name="xscore" value="0"/> | |
222 <search_score name="expect" value="0.068"/> | |
223 </search_hit> | |
224 </search_result> | |
225 </spectrum_query> | |
226 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00008.00008.2" start_scan="8" end_scan="8" precursor_neutral_mass="1106.5508" assumed_charge="2" index="8"> | |
227 <search_result> | |
228 <search_hit hit_rank="1" peptide="RQATSGMDLLS" peptide_prev_aa="K" peptide_next_aa="E" protein="sp|Q22909|HM30_CAEEL" protein_descr="Homeobox protein ceh-30 OS=Caenorhabditis elegans GN=ceh-30 PE=2 SV=2" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="1175.5607" massdiff="-69.010" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
229 <modification_info> | |
230 <mod_aminoacid_mass position="7" mass="147.0354" /> | |
231 </modification_info> | |
232 <search_score name="hyperscore" value="19.2"/> | |
233 <search_score name="nextscore" value="17.3"/> | |
234 <search_score name="bscore" value="8.8"/> | |
235 <search_score name="yscore" value="8"/> | |
236 <search_score name="cscore" value="0"/> | |
237 <search_score name="zscore" value="0"/> | |
238 <search_score name="ascore" value="0"/> | |
239 <search_score name="xscore" value="0"/> | |
240 <search_score name="expect" value="1.2"/> | |
241 </search_hit> | |
242 </search_result> | |
243 </spectrum_query> | |
244 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00009.00009.2" start_scan="9" end_scan="9" precursor_neutral_mass="1746.7706" assumed_charge="2" index="9"> | |
245 <search_result> | |
246 <search_hit hit_rank="1" peptide="EQLAQLMPPTSQLPGM" peptide_prev_aa="R" peptide_next_aa="P" protein="sp|P34663|HM23_CAEEL" protein_descr="Homeobox protein ceh-23 OS=Caenorhabditis elegans GN=ceh-23 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="30" calc_neutral_pep_mass="1753.8377" massdiff="-7.067" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
247 <modification_info> | |
248 <mod_aminoacid_mass position="7" mass="147.0354" /> | |
249 <mod_aminoacid_mass position="16" mass="147.0354" /> | |
250 </modification_info> | |
251 <search_score name="hyperscore" value="20.5"/> | |
252 <search_score name="nextscore" value="20.5"/> | |
253 <search_score name="bscore" value="0"/> | |
254 <search_score name="yscore" value="9.1"/> | |
255 <search_score name="cscore" value="0"/> | |
256 <search_score name="zscore" value="0"/> | |
257 <search_score name="ascore" value="0"/> | |
258 <search_score name="xscore" value="0"/> | |
259 <search_score name="expect" value="1.8"/> | |
260 </search_hit> | |
261 </search_result> | |
262 </spectrum_query> | |
263 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00010.00010.3" start_scan="10" end_scan="10" precursor_neutral_mass="1746.7642" assumed_charge="3" index="10"> | |
264 <search_result> | |
265 <search_hit hit_rank="1" peptide="SGMNMGGMGGLSSLGDVSK" peptide_prev_aa="S" peptide_next_aa="S" protein="tr|Q9YH59|Q9YH59_CHICK" protein_descr="Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="72" calc_neutral_pep_mass="1813.7647" massdiff="-67.001" num_tol_term="1" num_missed_cleavages="0" is_rejected="0"> | |
266 <modification_info> | |
267 <mod_aminoacid_mass position="3" mass="147.0354" /> | |
268 <mod_aminoacid_mass position="5" mass="147.0354" /> | |
269 <mod_aminoacid_mass position="8" mass="147.0354" /> | |
270 </modification_info> | |
271 <search_score name="hyperscore" value="22.7"/> | |
272 <search_score name="nextscore" value="21.6"/> | |
273 <search_score name="bscore" value="11.1"/> | |
274 <search_score name="yscore" value="6.9"/> | |
275 <search_score name="cscore" value="0"/> | |
276 <search_score name="zscore" value="0"/> | |
277 <search_score name="ascore" value="0"/> | |
278 <search_score name="xscore" value="0"/> | |
279 <search_score name="expect" value="2.5"/> | |
280 </search_hit> | |
281 </search_result> | |
282 </spectrum_query> | |
283 <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00011.00011.2" start_scan="11" end_scan="11" precursor_neutral_mass="1261.6340" assumed_charge="2" index="11"> | |
284 <search_result> | |
285 <search_hit hit_rank="1" peptide="FLVDDILRRK" peptide_prev_aa="S" peptide_next_aa="H" protein="tr|O16132|O16132_HYDVU" protein_descr="NK-2 class homeobox transcription factor OS=Hydra vulgaris GN=CnNK-2 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="18" calc_neutral_pep_mass="1255.7397" massdiff="5.894" num_tol_term="1" num_missed_cleavages="1" is_rejected="0"> | |
286 <search_score name="hyperscore" value="17.7"/> | |
287 <search_score name="nextscore" value="17.0"/> | |
288 <search_score name="bscore" value="11"/> | |
289 <search_score name="yscore" value="3.3"/> | |
290 <search_score name="cscore" value="0"/> | |
291 <search_score name="zscore" value="0"/> | |
292 <search_score name="ascore" value="0"/> | |
293 <search_score name="xscore" value="0"/> | |
294 <search_score name="expect" value="2.2"/> | |
295 </search_hit> | |
296 </search_result> | |
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1507 <search_result> | |
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1510 <search_score name="nextscore" value="17.7"/> | |
1511 <search_score name="bscore" value="6.5"/> | |
1512 <search_score name="yscore" value="6.7"/> | |
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1516 <search_score name="xscore" value="0"/> | |
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1520 </spectrum_query> | |
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1522 <search_result> | |
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1524 <search_score name="hyperscore" value="21.3"/> | |
1525 <search_score name="nextscore" value="18.2"/> | |
1526 <search_score name="bscore" value="0"/> | |
1527 <search_score name="yscore" value="9.9"/> | |
1528 <search_score name="cscore" value="0"/> | |
1529 <search_score name="zscore" value="0"/> | |
1530 <search_score name="ascore" value="0"/> | |
1531 <search_score name="xscore" value="0"/> | |
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1537 <search_result> | |
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1541 <search_score name="bscore" value="0"/> | |
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1546 <search_score name="xscore" value="0"/> | |
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1556 <search_score name="bscore" value="10.9"/> | |
1557 <search_score name="yscore" value="6.9"/> | |
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1585 <search_score name="nextscore" value="14.0"/> | |
1586 <search_score name="bscore" value="8.6"/> | |
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1597 <search_result> | |
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1599 <modification_info> | |
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1603 <search_score name="nextscore" value="11.0"/> | |
1604 <search_score name="bscore" value="8.7"/> | |
1605 <search_score name="yscore" value="10.2"/> | |
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1615 <search_result> | |
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1621 <search_score name="nextscore" value="11.6"/> | |
1622 <search_score name="bscore" value="8.6"/> | |
1623 <search_score name="yscore" value="10"/> | |
1624 <search_score name="cscore" value="0"/> | |
1625 <search_score name="zscore" value="0"/> | |
1626 <search_score name="ascore" value="0"/> | |
1627 <search_score name="xscore" value="0"/> | |
1628 <search_score name="expect" value="4.7"/> | |
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1631 </spectrum_query> | |
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1633 <search_result> | |
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1635 <modification_info> | |
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1638 <search_score name="hyperscore" value="13.1"/> | |
1639 <search_score name="nextscore" value="11.1"/> | |
1640 <search_score name="bscore" value="8.6"/> | |
1641 <search_score name="yscore" value="10"/> | |
1642 <search_score name="cscore" value="0"/> | |
1643 <search_score name="zscore" value="0"/> | |
1644 <search_score name="ascore" value="0"/> | |
1645 <search_score name="xscore" value="0"/> | |
1646 <search_score name="expect" value="4"/> | |
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