Mercurial > repos > iracooke > tpp_prophets

diff pepxml_to_table.xml @ 16:1b86e378de37 draft

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Fix tabular outputs. Export XML_ONLY variable
author iracooke
date Mon, 26 Oct 2015 20:40:34 -0400
parents 0746a2ae9e04
children
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--- a/pepxml_to_table.xml	Tue Oct 20 20:45:24 2015 -0400
+++ b/pepxml_to_table.xml	Mon Oct 26 20:40:34 2015 -0400
@@ -11,7 +11,7 @@
         <param name="invert_probs" type="boolean" label="Print inverted probabilities (ie 1-p instead of p)" truevalue="--invert-probabilities" falsevalue=""/>
     </inputs>
     <outputs>
-        <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
+        <data format="tabular" name="output" metadata_source="input_file" label="${input_file.display_name}.tsv" />
     </outputs>
     <tests>
         <!-- Just test that the tool runs and produces vaguely correct output -->