Mercurial > repos > iracooke > tpp_prophets

diff protein_prophet.xml @ 6:7005346b534d

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Uploaded
author iracooke
date Mon, 04 Mar 2013 19:20:05 -0500
parents 97f1c89cd831
children 3f0cb90824f1
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--- a/protein_prophet.xml	Mon Mar 04 19:09:54 2013 -0500
+++ b/protein_prophet.xml	Mon Mar 04 19:20:05 2013 -0500
@@ -8,7 +8,7 @@
 
 
 <!-- Note .. the input file is assumed to be the first argument -->
-  <command>protein_prophet_wrapper.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command>
+  <command interpreter="ruby">protein_prophet_wrapper.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command>
   <inputs>
 	
     <param name="input_file" type="data" format="peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Peptide Prophet Results" help="These files will typically be outputs from peptide prophet or interprophet"/>