<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="pepXML_std.xsl"?>
<msms_pipeline_analysis date="2014-06-22T13:57:05" summary_xml="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem.pep.xml" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd">
   <msms_run_summary base_name="mr176-BSA100fmole_BA3_01_8168.d_tandem" search_engine="X! Tandem" raw_data_type="raw" raw_data=".?">
      <sample_enzyme name="trypsin">
<specificity cut="KR" no_cut="P" sense="C"/>
</sample_enzyme>
<search_summary base_name="mr176-BSA100fmole_BA3_01_8168.d_tandem" search_engine="X! Tandem" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1">
         <search_database local_path="/Users/icooke/Desktop/iptest/AASequences.fasta" type="AA"/>
         <enzymatic_search_constraint enzyme="trypsin" max_num_internal_cleavages="2" min_number_termini="1" />
         <aminoacid_modification aminoacid="E" massdiff="-18.0106" mass="111.0320" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification-->
         <aminoacid_modification aminoacid="M" massdiff="15.9949" mass="147.0354" variable="Y" />
         <aminoacid_modification aminoacid="Q" massdiff="-17.0265" mass="111.0321" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification-->
         <terminal_modification terminus="n" massdiff="42.0106" mass="43.0184" protein_terminus="N" variable="Y" symbol="^" /><!--X! Tandem n-terminal AA variable modification-->
         
         <!-- Input parameters -->
         <parameter name="list path, default parameters" value="/Users/icooke/.rvm/gems/ruby-2.0.0-p353/gems/protk-1.2.6.pre6/lib/protk/data/tandem_isb_native_defaults.xml"/>
         <parameter name="list path, taxonomy information" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem.taxonomy.xml"/>
         <parameter name="output, histogram column width" value="30"/>
         <parameter name="output, histograms" value="no"/>
         <parameter name="output, log path" value=""/>
         <parameter name="output, maximum valid expectation value" value="0.1"/>
         <parameter name="output, message" value="1234567890"/>
         <parameter name="output, one sequence copy" value="no"/>
         <parameter name="output, parameters" value="yes"/>
         <parameter name="output, path" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d_tandem"/>
         <parameter name="output, path hashing" value="no"/>
         <parameter name="output, performance" value="yes"/>
         <parameter name="output, proteins" value="yes"/>
         <parameter name="output, results" value="all"/>
         <parameter name="output, sequence path" value=""/>
         <parameter name="output, sequences" value="no"/>
         <parameter name="output, sort results by" value="spectrum"/>
         <parameter name="output, spectra" value="no"/>
         <parameter name="output, xsl path" value="tandem-style.xsl"/>
         <parameter name="protein, C-terminal residue modification mass" value=""/>
         <parameter name="protein, N-terminal residue modification mass" value=""/>
         <parameter name="protein, cleavage C-terminal mass change" value=""/>
         <parameter name="protein, cleavage N-terminal mass change" value=""/>
         <parameter name="protein, cleavage semi" value="yes"/>
         <parameter name="protein, cleavage site" value="[RK]|{P}"/>
         <parameter name="protein, homolog management" value="no"/>
         <parameter name="protein, modified residue mass file" value=""/>
         <parameter name="protein, quick acetyl" value="yes"/>
         <parameter name="protein, taxon" value="AASequences.fasta"/>
         <parameter name="refine" value="no"/>
         <parameter name="refine, maximum valid expectation value" value="0.1"/>
         <parameter name="refine, sequence path" value=""/>
         <parameter name="refine, spectrum synthesis" value="yes"/>
         <parameter name="residue, modification mass" value=""/>
         <parameter name="residue, potential modification mass" value="15.994915@M"/>
         <parameter name="residue, potential modification motif" value=""/>
         <parameter name="scoring, a ions" value="no"/>
         <parameter name="scoring, b ions" value="yes"/>
         <parameter name="scoring, c ions" value="no"/>
         <parameter name="scoring, cyclic permutation" value="no"/>
         <parameter name="scoring, include reverse" value="no"/>
         <parameter name="scoring, maximum missed cleavage sites" value="2"/>
         <parameter name="scoring, minimum ion count" value="4"/>
         <parameter name="scoring, x ions" value="no"/>
         <parameter name="scoring, y ions" value="yes"/>
         <parameter name="scoring, z ions" value="no"/>
         <parameter name="spectrum, dynamic range" value="100.0"/>
         <parameter name="spectrum, fragment mass type" value="monoisotopic"/>
         <parameter name="spectrum, fragment monoisotopic mass error" value="0.4"/>
         <parameter name="spectrum, fragment monoisotopic mass error units" value="Daltons"/>
         <parameter name="spectrum, maximum parent charge" value="5"/>
         <parameter name="spectrum, minimum fragment mz" value="50.0"/>
         <parameter name="spectrum, minimum parent m+h" value="600.0"/>
         <parameter name="spectrum, minimum peaks" value="6"/>
         <parameter name="spectrum, parent monoisotopic mass error minus" value="100.0"/>
         <parameter name="spectrum, parent monoisotopic mass error plus" value="100.0"/>
         <parameter name="spectrum, parent monoisotopic mass error units" value="Daltons"/>
         <parameter name="spectrum, parent monoisotopic mass isotope error" value="no"/>
         <parameter name="spectrum, path" value="/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8168.d.mgf"/>
         <parameter name="spectrum, sequence batch size" value="1000"/>
         <parameter name="spectrum, threads" value="1"/>
         <parameter name="spectrum, total peaks" value="50"/>
         <parameter name="spectrum, use conditioning" value="yes"/>
         <parameter name="spectrum, use noise suppression" value="no"/>
         <!-- Unused input parameters -->
         <parameter name="protein, use minimal annotations" value="yes"/>
         <parameter name="refine, modification mass" value=""/>
         <parameter name="refine, point mutations" value="no"/>
         <parameter name="refine, potential C-terminus modifications" value=""/>
         <parameter name="refine, potential N-terminus modifications" value=""/>
         <parameter name="refine, potential modification mass" value=""/>
         <parameter name="refine, potential modification motif" value=""/>
         <parameter name="refine, tic percent" value="10"/>
         <parameter name="refine, unanticipated cleavage" value="no"/>
         <parameter name="refine, use potential modifications for full refinement" value="no"/>
         <parameter name="scoring, pluggable scoring" value="no"/>
         <parameter name="spectrum, maximum parent m+h" value="4000.0"/>
         <!-- Performance parameters -->
         <parameter name="list path, sequence source #1" value="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
         <parameter name="list path, sequence source description #1" value="no description"/>
         <parameter name="modelling, duplicate peptide ids" value="0"/>
         <parameter name="modelling, duplicate proteins" value="0"/>
         <parameter name="modelling, total peptides used" value="542390"/>
         <parameter name="modelling, total proteins used" value="33"/>
         <parameter name="modelling, total spectra used" value="118"/>
         <parameter name="process, start time" value="2014:06:22:13:57:05"/>
         <parameter name="process, version" value="X! Tandem Sledgehammer (2013.09.01.1)"/>
         <parameter name="quality values" value="12 10 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0"/>
         <parameter name="refining, # input models" value="0"/>
         <parameter name="refining, # input spectra" value="0"/>
         <parameter name="refining, # partial cleavage" value="0"/>
         <parameter name="refining, # point mutations" value="0"/>
         <parameter name="refining, # potential C-terminii" value="0"/>
         <parameter name="refining, # potential N-terminii" value="0"/>
         <parameter name="refining, # unanticipated cleavage" value="0"/>
         <parameter name="timing, initial modelling total (sec)" value="0.63"/>
         <parameter name="timing, initial modelling/spectrum (sec)" value="0.0053"/>
         <parameter name="timing, load sequence models (sec)" value="0.00"/>
         <parameter name="timing, refinement/spectrum (sec)" value="0.0000"/>
      </search_summary>
      
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      <search_result>
         <search_hit hit_rank="1" peptide="DLIRQQCYLFN" peptide_prev_aa="K" peptide_next_aa="H" protein="sp|Q26604|SMOX5_SCHMA" protein_descr="Homeobox protein SMOX-5 OS=Schistosoma mansoni GN=SMOX-5 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="20" calc_neutral_pep_mass="1393.6817" massdiff="49.008" num_tol_term="1" num_missed_cleavages="1" is_rejected="0">
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            <search_score name="nextscore" value="19.0"/>
            <search_score name="bscore" value="3.2"/>
            <search_score name="yscore" value="10.7"/>
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            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="2.1"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00002.00002.3" start_scan="2" end_scan="2" precursor_neutral_mass="1248.6649" assumed_charge="3" index="2">
      <search_result>
         <search_hit hit_rank="1" peptide="ANTNNYAPKSSR" peptide_prev_aa="A" peptide_next_aa="N" protein="sp|Q04787|BSH_DROME" protein_descr="Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="44" calc_neutral_pep_mass="1303.6267" massdiff="-54.962" num_tol_term="1" num_missed_cleavages="1" is_rejected="0">
            <search_score name="hyperscore" value="20.6"/>
            <search_score name="nextscore" value="20.6"/>
            <search_score name="bscore" value="9.2"/>
            <search_score name="yscore" value="10.3"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
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            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="2.8"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00003.00003.2" start_scan="3" end_scan="3" precursor_neutral_mass="1398.7025" assumed_charge="2" index="3">
      <search_result>
         <search_hit hit_rank="1" peptide="NRAVFSLMQRR" peptide_prev_aa="W" peptide_next_aa="G" protein="sp|P28468|HOX1_HALRO" protein_descr="Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="1374.7307" massdiff="23.972" num_tol_term="1" num_missed_cleavages="1" is_rejected="0">
            <modification_info>
               <mod_aminoacid_mass position="8" mass="147.0354" />
            </modification_info>
            <search_score name="hyperscore" value="19.6"/>
            <search_score name="nextscore" value="19.1"/>
            <search_score name="bscore" value="2.7"/>
            <search_score name="yscore" value="10"/>
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            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
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            <search_score name="expect" value="0.32"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00004.00004.2" start_scan="4" end_scan="4" precursor_neutral_mass="921.5162" assumed_charge="2" index="4">
      <search_result>
         <search_hit hit_rank="1" peptide="YLASAERA" peptide_prev_aa="K" peptide_next_aa="A" protein="sp|O93367|TLX3_CHICK" protein_descr="T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="14" calc_neutral_pep_mass="861.4347" massdiff="60.081" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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            <search_score name="expect" value="1.8"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00005.00005.2" start_scan="5" end_scan="5" precursor_neutral_mass="1501.6666" assumed_charge="2" index="5">
      <search_result>
         <search_hit hit_rank="1" peptide="FKTTRYLSVCER" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|P22807|SLOU_DROME" protein_descr="Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="22" calc_neutral_pep_mass="1483.7607" massdiff="17.906" num_tol_term="2" num_missed_cleavages="2" is_rejected="0">
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            <search_score name="nextscore" value="19.8"/>
            <search_score name="bscore" value="10.5"/>
            <search_score name="yscore" value="8.5"/>
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            <search_score name="ascore" value="0"/>
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            <search_score name="expect" value="1.3"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00006.00006.3" start_scan="6" end_scan="6" precursor_neutral_mass="1748.7227" assumed_charge="3" index="6">
      <search_result>
         <search_hit hit_rank="1" peptide="RQTAVGLELLAEAGNYSA" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|O88181|BARH2_RAT" protein_descr="BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="11" tot_num_ions="68" calc_neutral_pep_mass="1843.9427" massdiff="-95.220" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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            <search_score name="nextscore" value="21.1"/>
            <search_score name="bscore" value="8.5"/>
            <search_score name="yscore" value="9.8"/>
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            <search_score name="expect" value="2.5"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00007.00007.2" start_scan="7" end_scan="7" precursor_neutral_mass="1160.4761" assumed_charge="2" index="7">
      <search_result>
         <search_hit hit_rank="1" peptide="EEPETEVRM" peptide_prev_aa="K" peptide_next_aa="V" protein="sp|Q01702|DLX3B_DANRE" protein_descr="Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="16" calc_neutral_pep_mass="1100.4807" massdiff="59.995" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00008.00008.2" start_scan="8" end_scan="8" precursor_neutral_mass="1106.5508" assumed_charge="2" index="8">
      <search_result>
         <search_hit hit_rank="1" peptide="RQATSGMDLLS" peptide_prev_aa="K" peptide_next_aa="E" protein="sp|Q22909|HM30_CAEEL" protein_descr="Homeobox protein ceh-30 OS=Caenorhabditis elegans GN=ceh-30 PE=2 SV=2" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="1175.5607" massdiff="-69.010" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00009.00009.2" start_scan="9" end_scan="9" precursor_neutral_mass="1746.7706" assumed_charge="2" index="9">
      <search_result>
         <search_hit hit_rank="1" peptide="EQLAQLMPPTSQLPGM" peptide_prev_aa="R" peptide_next_aa="P" protein="sp|P34663|HM23_CAEEL" protein_descr="Homeobox protein ceh-23 OS=Caenorhabditis elegans GN=ceh-23 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="30" calc_neutral_pep_mass="1753.8377" massdiff="-7.067" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00010.00010.3" start_scan="10" end_scan="10" precursor_neutral_mass="1746.7642" assumed_charge="3" index="10">
      <search_result>
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            <search_score name="nextscore" value="21.6"/>
            <search_score name="bscore" value="11.1"/>
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            <search_score name="expect" value="2.5"/>
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      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00011.00011.2" start_scan="11" end_scan="11" precursor_neutral_mass="1261.6340" assumed_charge="2" index="11">
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            <search_score name="xscore" value="0"/>
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      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00012.00012.2" start_scan="12" end_scan="12" precursor_neutral_mass="1746.7675" assumed_charge="2" index="12">
      <search_result>
         <search_hit hit_rank="1" peptide="KQNPGMDVNSPTIPPP" peptide_prev_aa="K" peptide_next_aa="G" protein="sp|P22807|SLOU_DROME" protein_descr="Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="30" calc_neutral_pep_mass="1672.8247" massdiff="73.943" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
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      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00013.00013.2" start_scan="13" end_scan="13" precursor_neutral_mass="1122.5442" assumed_charge="2" index="13">
      <search_result>
         <search_hit hit_rank="1" peptide="PDPAKDPRADK" peptide_prev_aa="D" peptide_next_aa="K" protein="sp|O35767|NKX25_RAT" protein_descr="Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="1190.6047" massdiff="-68.061" num_tol_term="1" num_missed_cleavages="2" is_rejected="0">
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         <search_hit hit_rank="1" peptide="NSGMSFDFPPK" peptide_prev_aa="K" peptide_next_aa="F" protein="sp|P28468|HOX1_HALRO" protein_descr="Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="10" tot_num_ions="20" calc_neutral_pep_mass="1207.5327" massdiff="-44.870" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
            <search_score name="hyperscore" value="24.4"/>
            <search_score name="nextscore" value="17.7"/>
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            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="0.085"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00090.00090.2" start_scan="90" end_scan="90" precursor_neutral_mass="1398.7382" assumed_charge="2" index="90">
      <search_result>
         <search_hit hit_rank="1" peptide="SEPGKQPGEATSSSG" peptide_prev_aa="R" peptide_next_aa="D" protein="sp|Q04787|BSH_DROME" protein_descr="Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="28" calc_neutral_pep_mass="1399.6217" massdiff="-0.883" num_tol_term="1" num_missed_cleavages="1" is_rejected="0">
            <search_score name="hyperscore" value="21.3"/>
            <search_score name="nextscore" value="18.2"/>
            <search_score name="bscore" value="0"/>
            <search_score name="yscore" value="9.9"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="0.38"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00091.00091.2" start_scan="91" end_scan="91" precursor_neutral_mass="1050.5504" assumed_charge="2" index="91">
      <search_result>
         <search_hit hit_rank="1" peptide="DYNGLSTSQT" peptide_prev_aa="K" peptide_next_aa="S" protein="sp|P28468|HOX1_HALRO" protein_descr="Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="18" calc_neutral_pep_mass="1066.4567" massdiff="-15.906" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <search_score name="hyperscore" value="19.6"/>
            <search_score name="nextscore" value="19.4"/>
            <search_score name="bscore" value="0"/>
            <search_score name="yscore" value="11.2"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="3.5"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00092.00092.1" start_scan="92" end_scan="92" precursor_neutral_mass="495.2877" assumed_charge="1" index="92">
      <search_result>
         <search_hit hit_rank="1" peptide="SRPGSP" peptide_prev_aa="K" peptide_next_aa="A" protein="sp|P52955|LBX1_MOUSE" protein_descr="Transcription factor LBX1 OS=Mus musculus GN=Lbx1 PE=1 SV=2" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="581.2917" massdiff="-86.004" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <search_score name="hyperscore" value="17.8"/>
            <search_score name="nextscore" value="16.6"/>
            <search_score name="bscore" value="10.9"/>
            <search_score name="yscore" value="6.9"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="2.4"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00093.00093.2" start_scan="93" end_scan="93" precursor_neutral_mass="1566.7976" assumed_charge="2" index="93">
      <search_result>
         <search_hit hit_rank="1" peptide="TSRCGPHSPLRLGASG" peptide_prev_aa="R" peptide_next_aa="C" protein="tr|Q90853|Q90853_CHICK" protein_descr="Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" num_tot_proteins="1" num_matched_ions="9" tot_num_ions="30" calc_neutral_pep_mass="1576.7897" massdiff="-9.992" num_tol_term="1" num_missed_cleavages="2" is_rejected="0">
            <search_score name="hyperscore" value="22.5"/>
            <search_score name="nextscore" value="18.6"/>
            <search_score name="bscore" value="7.6"/>
            <search_score name="yscore" value="7.4"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="0.071"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00094.00094.1" start_scan="94" end_scan="94" precursor_neutral_mass="501.3357" assumed_charge="1" index="94">
      <search_result>
         <search_hit hit_rank="1" peptide="LNPGSV" peptide_prev_aa="K" peptide_next_aa="G" protein="sp|Q04787|BSH_DROME" protein_descr="Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="10" calc_neutral_pep_mass="567.3017" massdiff="-65.966" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <search_score name="hyperscore" value="16.3"/>
            <search_score name="nextscore" value="14.0"/>
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            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="1.9"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00096.00096.1" start_scan="96" end_scan="96" precursor_neutral_mass="996.6218" assumed_charge="1" index="95">
      <search_result>
         <search_hit hit_rank="1" peptide="VLMFCELP" peptide_prev_aa="R" peptide_next_aa="P" protein="tr|O70238|O70238_MOUSE" protein_descr="Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="14" calc_neutral_pep_mass="948.4447" massdiff="48.177" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <modification_info>
               <mod_aminoacid_mass position="3" mass="147.0354" />
            </modification_info>
            <search_score name="hyperscore" value="13.2"/>
            <search_score name="nextscore" value="11.0"/>
            <search_score name="bscore" value="8.7"/>
            <search_score name="yscore" value="10.2"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="3.9"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00099.00099.1" start_scan="99" end_scan="99" precursor_neutral_mass="997.0408" assumed_charge="1" index="96">
      <search_result>
         <search_hit hit_rank="1" peptide="VLMFCELP" peptide_prev_aa="R" peptide_next_aa="P" protein="tr|O70238|O70238_MOUSE" protein_descr="Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="14" calc_neutral_pep_mass="948.4447" massdiff="48.596" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <modification_info>
               <mod_aminoacid_mass position="3" mass="147.0354" />
            </modification_info>
            <search_score name="hyperscore" value="13.0"/>
            <search_score name="nextscore" value="11.6"/>
            <search_score name="bscore" value="8.6"/>
            <search_score name="yscore" value="10"/>
            <search_score name="cscore" value="0"/>
            <search_score name="zscore" value="0"/>
            <search_score name="ascore" value="0"/>
            <search_score name="xscore" value="0"/>
            <search_score name="expect" value="4.7"/>
         </search_hit>
      </search_result>
      </spectrum_query>
      <spectrum_query spectrum="mr176-BSA100fmole_BA3_01_8168.d.mgf.00100.00100.1" start_scan="100" end_scan="100" precursor_neutral_mass="996.6215" assumed_charge="1" index="97">
      <search_result>
         <search_hit hit_rank="1" peptide="VLMFCELP" peptide_prev_aa="R" peptide_next_aa="P" protein="tr|O70238|O70238_MOUSE" protein_descr="Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="14" calc_neutral_pep_mass="948.4447" massdiff="48.177" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
            <modification_info>
               <mod_aminoacid_mass position="3" mass="147.0354" />
            </modification_info>
            <search_score name="hyperscore" value="13.1"/>
            <search_score name="nextscore" value="11.1"/>
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            <search_score name="yscore" value="10"/>
            <search_score name="cscore" value="0"/>
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            <search_score name="expect" value="4"/>
         </search_hit>
      </search_result>
      </spectrum_query>
   </msms_run_summary>
</msms_pipeline_analysis>