# HG changeset patch
# User iracooke
# Date 1362441856 18000
# Node ID a67a5d30bb808a9a5e2e1161967a3325fb030111
# Parent 4c2e97f928d7988aeef042dab6ee6a3085e9834c
Uploaded
diff -r 4c2e97f928d7 -r a67a5d30bb80 peptide_prophet_wrapper.rb
--- a/peptide_prophet_wrapper.rb Mon Mar 04 18:41:22 2013 -0500
+++ b/peptide_prophet_wrapper.rb Mon Mar 04 19:04:16 2013 -0500
@@ -33,4 +33,4 @@
cmd << ";ruby -pi -e \"gsub('#{actual_input_path_string}', '#{original_input_file}')\" peptide_prophet_output.pep.xml"
cmd << ";ruby -pi -e \"gsub('#{full_tmp_output_path_string}', '#{actual_output_path_string}')\" peptide_prophet_output.pep.xml"
-%x[#{cmd}]
+p %x[#{cmd}]
diff -r 4c2e97f928d7 -r a67a5d30bb80 pepxml_to_table.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/pepxml_to_table.xml Mon Mar 04 19:04:16 2013 -0500
@@ -0,0 +1,29 @@
+
+
+
+ galaxy_protk
+
+
+
+
+ Converts a pepXML file to a tab delimited text file
+
+
+
+rvm 1.9.3@protk-1.1.9 do pepxml_to_table.rb $input_file -o $output
+
+
+
+
+
+
+
+
+
+
+
+
+ Convert a pepXML file to Tab delimited text
+
+
+
diff -r 4c2e97f928d7 -r a67a5d30bb80 repository_dependencies.xml
--- a/repository_dependencies.xml Mon Mar 04 18:41:22 2013 -0500
+++ b/repository_dependencies.xml Mon Mar 04 19:04:16 2013 -0500
@@ -1,7 +1,7 @@
-
+