# HG changeset patch
# User iracooke
# Date 1445911483 14400
# Node ID 868e75fc0f700379e30b9840840cfa8ba2f424ae
# Parent  1b86e378de378ef7419035b5b013b6cf251f48e4
Export XML_ONLY variable

diff -r 1b86e378de37 -r 868e75fc0f70 peptide_prophet.xml
--- a/peptide_prophet.xml	Mon Oct 26 20:40:34 2015 -0400
+++ b/peptide_prophet.xml	Mon Oct 26 22:04:43 2015 -0400
@@ -6,10 +6,7 @@
         <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
     </requirements>
     <command>
-        # This should be in the tpp_package.
-        # A hack for now
-            export XML_ONLY="true";
-
+        export XML_ONLY="true";
         peptide_prophet.rb
             --galaxy $input_file
             -o peptide_prophet_output.pep.xml