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comparison tandem.xml @ 5:0c2ee2a55613

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author iracooke
date Tue, 05 Mar 2013 00:29:58 -0500
parents 5d2228f63b53
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4:4facf54f380c 5:0c2ee2a55613
1 <tool id="proteomics_search_tandem_1" name="X!Tandem MSMS Search" version="1.0.0"> 1 <tool id="proteomics_search_tandem_1" name="X!Tandem MSMS Search" version="1.0.1">
2 2
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.9">galaxy_protk</requirement> 4 <requirement type="package" version="1.2.0">galaxy_protk</requirement>
5 <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> 5 <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement>
6 </requirements> 6 </requirements>
7 7
8 <description>Run an X!Tandem Search</description> 8 <description>Run an X!Tandem Search</description>
9 9
10 <command> 10 <command>
11 #if $database.source_select=="built_in": 11 #if $database.source_select=="built_in":
12 rvm 1.9.3@protk-1.1.9 do tandem_search.rb -d $database.dbkey 12 rvm 1.9.3@protk-1.2.0 do tandem_search.rb -d $database.dbkey
13 #else #rvm 1.9.3@protk-1.1.9 do tandem_search.rb -d $database.fasta_file 13 #else #rvm 1.9.3@protk-1.2.0 do tandem_search.rb -d $database.fasta_file
14 #end if 14 #end if
15 15
16 --var-mods=' 16 --var-mods='
17 $variable_mods 17 $variable_mods
18 #for $custom_variable_mod in $custom_variable_mods: 18 #for $custom_variable_mod in $custom_variable_mods: