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comparison tandem.xml @ 17:29e2df3edf11 draft

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author iracooke
date Tue, 27 Oct 2015 01:45:26 -0400
parents 63b15b77e56c
children bbef168551fe
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16:63b15b77e56c 17:29e2df3edf11
3 <requirements> 3 <requirements>
4 <container type="docker">iracooke/protk-1.4.3</container> 4 <container type="docker">iracooke/protk-1.4.3</container>
5 <requirement type="package" version="1.4.3">protk</requirement> 5 <requirement type="package" version="1.4.3">protk</requirement>
6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
7 </requirements> 7 </requirements>
8 <stdio>
9 <exit_code range="1:" level="fatal" description="Failure" />
10 </stdio>
8 <command> 11 <command>
9 #if $database.source_select=="built_in": 12 #if $database.source_select=="built_in":
10 tandem_search.rb -d $database.dbkey 13 tandem_search.rb -d $database.dbkey
11 #else 14 #else
12 tandem_search.rb -d $database.fasta_file 15 tandem_search.rb -d $database.fasta_file