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comparison test-data/bsa.mzML @ 2:5d2228f63b53

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author iracooke
date Mon, 04 Mar 2013 01:51:22 -0500
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1:b4123e38df43 2:5d2228f63b53
1 <?xml version="1.0" encoding="ISO-8859-1"?>
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.1_idx.xsd">
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="bsa" version="1.1.0">
4 <cvList count="2">
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.30.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
7 </cvList>
8 <fileDescription>
9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
12 </fileContent>
13 <sourceFileList count="1">
14 <sourceFile id="bsa.mgf" name="bsa.mgf" location="file:///">
15 <cvParam cvRef="MS" accession="MS:1000774" name="multiple peak list nativeID format" value=""/>
16 <cvParam cvRef="MS" accession="MS:1001062" name="Mascot MGF file" value=""/>
17 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="92c6fa5d4ff59e2124950546a651bb9a85bbfd92"/>
18 </sourceFile>
19 </sourceFileList>
20 </fileDescription>
21 <softwareList count="1">
22 <software id="pwiz_3.0.4140" version="3.0.4140">
23 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard" value=""/>
24 </software>
25 </softwareList>
26 <instrumentConfigurationList count="1">
27 <instrumentConfiguration id="IC">
28 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" value=""/>
29 </instrumentConfiguration>
30 </instrumentConfigurationList>
31 <dataProcessingList count="1">
32 <dataProcessing id="pwiz_Reader_conversion">
33 <processingMethod order="0" softwareRef="pwiz_3.0.4140">
34 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
35 </processingMethod>
36 <processingMethod order="1" softwareRef="pwiz_3.0.4140">
37 <userParam name="most intense count (excluding ties at the threshold)" value="100"/>
38 </processingMethod>
39 </dataProcessing>
40 </dataProcessingList>
41 <run id="bsa" defaultInstrumentConfigurationRef="IC">
42 <spectrumList count="1" defaultDataProcessingRef="pwiz_Reader_conversion">
43 <spectrum index="0" id="index=0" defaultArrayLength="97" dataProcessingRef="pwiz_Reader_conversion">
44 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
45 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2"/>
46 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
47 <cvParam cvRef="MS" accession="MS:1000796" name="spectrum title" value="Cmpd 1, +MSn(722.3522), 33.5 min"/>
48 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
49 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="198.13402"/>
50 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1280.62643"/>
51 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="21166.0"/>
52 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="249.17284"/>
53 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="2164.0"/>
54 <scanList count="1">
55 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
56 <scan>
57 </scan>
58 </scanList>
59 <precursorList count="1">
60 <precursor>
61 <selectedIonList count="1">
62 <selectedIon>
63 <cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="722.35225 26693" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
64 <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
65 </selectedIon>
66 </selectedIonList>
67 <activation>
68 </activation>
69 </precursor>
70 </precursorList>
71 <binaryDataArrayList count="2">
72 <binaryDataArray encodedLength="1036">
73 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/>
74 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
75 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
76 <binary>RPrt68CEaUDI7236swRrQLecS3FVwmxAdcjNcANFbUBlwi/182NuQL/xtWeWAm9AGm7A54clb0BNSkG3FyJxQJOMnIU9QXFAFCLgEKpScUCe6pCb4fJyQNbiUwAME3RA529CIQJSdUDmllZDYmJ2QFch5SfVQXdAOiNKe4NRd0A2WaMeolJ4QGwE4nX9YXhAG7tE9VZyeUAaNPRPcNN6QDyInSl0JHtAEqCmli1Te0CuDRXj/JJ7QBsS91h6gnxAet/42jOzfEC94xQdyZJ9QEbT2clgMn5Ah78ma9RCf0CAYI4ev1J/QPCiryCNKoBAqiuf5XkxgEDtuyL4H3qAQDI4Sl7dgYBAEVMiiZ66gEBi+IiY0tGAQDMbZJKR2YBAjL6CNCMKgUA0ETY8vUGBQEymCkYlUoFAzzEge71hgUB8D5cc97WBQKYnLPHAuYFArDlAMEfigUBWSPlJ9fGBQP2H9NsX/oFApMLYQlApgkBmFMstLUKCQG2tLxLaWYJAMPDce3ixgkAYsrrVc7mCQHAlOzbCOYNAPrMkQI1Bg0Ang6PkFWqDQOrPfqRIgoNAdZMYBBaKg0BaL4ZyIrqDQGIQWDm0woNANUHUfcDJg0AMAiuHVgqEQCzUmubdUoRAL6NYbilqhEDXwFYJlpqEQGjon+CiooRA9Pi9TT/ShEBrZcIvNdqEQBqjdVR16oRAs5jYfBzyhEBx5ldzwFGFQIz4Tsx6eoVAhPBo4wiKhUCCHJQwE5KFQCUGgZUD0oVAy9b6IuHZhUBeukkMAmKGQM11Gmkp8oZA1xcJbTnDh0AWwf9WMsuHQJhRLLd0SohAldQJaGJTiEAUyy2thoKIQNuizAbZColAjZyFPa0SiUDLSpNSkGKJQCveyDzymolAS80eaMXqiUB47j1csvKJQONTAIzneopAejarPlfTikAMPPcerlOLQDdPdciNW4tA1EM0usPji0CY3ZOHBauMQD90QX3L845A/+xHigh8j0D7OnDOKPaRQAUXK2oQ+pFAbqMBvCU+kkA=</binary>
77 </binaryDataArray>
78 <binaryDataArray encodedLength="520">
79 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
80 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/>
81 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts"/>
82 <binary>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</binary>
83 </binaryDataArray>
84 </binaryDataArrayList>
85 </spectrum>
86 </spectrumList>
87 </run>
88 </mzML>
89 <indexList count="2">
90 <index name="spectrum">
91 <offset idRef="index=0">2685</offset>
92 </index>
93 </indexList>
94 <indexListOffset>7058</indexListOffset>
95 <fileChecksum>b76171188a63cfad075d3738a172b15f1f9e0c4c</fileChecksum>
96 </indexedmzML>