Mercurial > repos > iracooke > xtandem
diff tandem_to_pepxml.xml @ 15:0faaab4f192a draft
planemo upload for repository https://github.com/iracooke/protk-galaxytools/tree/master/xtandem commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
author | iracooke |
---|---|
date | Tue, 20 Oct 2015 20:47:05 -0400 |
parents | 9d6e0ad4d600 |
children | 29e2df3edf11 |
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--- a/tandem_to_pepxml.xml Thu Mar 26 19:53:53 2015 -0400 +++ b/tandem_to_pepxml.xml Tue Oct 20 20:47:05 2015 -0400 @@ -1,38 +1,33 @@ -<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.1.0"> - <requirements> - <container type="docker">iracooke/protk-1.4.1</container> - <requirement type="package" version="1.4">protk</requirement> - <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> +<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.1.1"> + <description>Converts a tandem result file to pepXML</description> + <requirements> + <container type="docker">iracooke/protk-1.4.3</container> + <requirement type="package" version="1.4.3">protk</requirement> + <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> </requirements> + <command> + tandem_to_pepxml.rb $input_file -o $output + </command> - <description>Converts a tandem result file to pepXML</description> - - <command> - tandem_to_pepxml.rb $input_file -o $output - </command> - - <inputs> - <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/> - </inputs> + <inputs> + <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/> + </inputs> - <outputs> - <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" /> - </outputs> - - <help> - Convert X!Tandem results to pepXML - </help> - - <tests> - <!-- Just test that the tool runs and produces vaguely correct output --> - <test> - <param name="input_file" value="tandem_to_pepxml_test.tandem" format="tandem"/> - <output name="output" format="raw_pepxml"> - <assert_contents> - <has_text text="SQVFQLESTFDV" /> - </assert_contents> - </output> - </test> - </tests> - + <outputs> + <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" /> + </outputs> + <tests> + <!-- Just test that the tool runs and produces vaguely correct output --> + <test> + <param name="input_file" value="tandem_to_pepxml_test.tandem" format="tandem"/> + <output name="output" format="raw_pepxml"> + <assert_contents> + <has_text text="SQVFQLESTFDV" /> + </assert_contents> + </output> + </test> + </tests> + <help> + Convert X!Tandem results to pepXML + </help> </tool>