--- a/repository_dependencies.xml	Mon Mar 04 01:57:57 2013 -0500
+++ b/repository_dependencies.xml	Mon Mar 04 18:41:50 2013 -0500
@@ -3,6 +3,14 @@
      <repository toolshed="http://10.211.55.28:9009" name="proteomics_datatypes" owner="iracooke" changeset_revision="699a890a9d99"/>
  </repositories>
  -->
-<repositories description="X!Tandem requires Proteomics Datatypes as well the trans proteomic pipeline">
-     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="84c6c70a4e5a"/>
- </repositories>
\ No newline at end of file
+<repositories description="Proteomics datatypes and the TPP">
+ 
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="f74290b136fc"/>
+
+	<repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_trans_proteomic_pipeline" owner="iracooke" changeset_revision="f302406a0297"/>
+
+
+ </repositories>
+