# HG changeset patch # User iracooke # Date 1445924726 14400 # Node ID 29e2df3edf1150071bdf7358082014a461cc7e83 # Parent 63b15b77e56c753214b81871b3e71e40b4b4e331 Check exit code diff -r 63b15b77e56c -r 29e2df3edf11 tandem.xml --- a/tandem.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tandem.xml Tue Oct 27 01:45:26 2015 -0400 @@ -5,6 +5,9 @@ protk trans_proteomic_pipeline + + + #if $database.source_select=="built_in": tandem_search.rb -d $database.dbkey diff -r 63b15b77e56c -r 29e2df3edf11 tandem_to_pepxml.xml --- a/tandem_to_pepxml.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tandem_to_pepxml.xml Tue Oct 27 01:45:26 2015 -0400 @@ -5,6 +5,9 @@ protk trans_proteomic_pipeline + + + tandem_to_pepxml.rb $input_file -o $output diff -r 63b15b77e56c -r 29e2df3edf11 tool_dependencies.xml --- a/tool_dependencies.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tool_dependencies.xml Tue Oct 27 01:45:26 2015 -0400 @@ -1,7 +1,7 @@ - +