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annotate abricate_list.xml @ 0:862f5a86854d draft

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author iuc
date Tue, 29 Nov 2016 14:52:34 -0500
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children 15197951a756
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1 <tool id="abricate_list" name="ABRicate List" version="0.1.0">
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2 <requirements>
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3 <requirement type="package" version="0.3">abricate</requirement>
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4 <requirement type="package" version="5.18.1">perl</requirement>
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5 <requirement type="package" version="2.2.31">blast+</requirement>
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6 </requirements>
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7
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8 <version_command>abricate --version</version_command>
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9
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10 <command detect_errors="exit_code"><![CDATA[
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11 abricate --list 2> "$report"
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12 ]]></command>
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13
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14 <inputs>
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15
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16 </inputs>
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17
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18 <outputs>
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19 <data format="txt" name="report" label="${tool.name} - list of databases"/>
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20 </outputs>
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21
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22 <tests>
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23 <test>
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24 <output name="report" ftype="txt" file="output_list.txt" />
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25 </test>
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26 </tests>
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27
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28 <help><![CDATA[
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29 **What it does**
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30
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31 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
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32
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33 ]]></help>
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34
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35 <citations>
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36 <citation type="bibtex">
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37 @UNPUBLISHED{Seemann2016,
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38 author = "Seemann T",
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39 title = "ABRicate: mass screening of contigs for antiobiotic resistance genes",
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40 year = "2016",
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41 note = "https://github.com/tseemann/abricate"}
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42 </citation>
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43 </citations>
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44 </tool>