Mercurial > repos > iuc > abricate

annotate test-data/output_db-megares.txt @ 10:c2ef298da409 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 6285862fce2b3e298ef0333489392335091b5b0d"
author iuc
date Thu, 15 Apr 2021 18:21:41 +0000
parents b734db305578
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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1 #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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2 MRSA0252.fna gi|49482253|ref|NC_002952.2| 33660 34139 + RLMH 1-480/480 =============== 0/0 100.00 99.17 megares MEG_6058 Drugs:MLS:23S_rRNA_methyltransferases:RLMH
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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3 MRSA0252.fna gi|49482253|ref|NC_002952.2| 40165 40569 - BLE 1-405/405 =============== 0/0 100.00 100.00 megares MEG_1460 Drugs:Glycopeptides:Bleomycin_resistance_protein:BLE
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
parents:
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4 MRSA0252.fna gi|49482253|ref|NC_002952.2| 40786 41556 - ANT4-PRIME 1-771/771 =============== 0/0 100.00 99.87 megares MEG_978 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT4-PRIME
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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5 MRSA0252.fna gi|49482253|ref|NC_002952.2| 44919 46928 - MECA 1-2010/2010 =============== 0/0 100.00 100.00 megares MEG_3785 Drugs:betalactams:Penicillin_binding_protein:MECA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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6 MRSA0252.fna gi|49482253|ref|NC_002952.2| 47025 48782 + MECA 1-1758/1758 =============== 0/0 100.00 100.00 megares MEG_3786 Drugs:betalactams:Penicillin_binding_protein:MECA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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7 MRSA0252.fna gi|49482253|ref|NC_002952.2| 48782 49153 + MECI 1-372/372 =============== 0/0 100.00 99.73 megares MEG_3804 Drugs:betalactams:Penicillin_binding_protein_regulator:MECI
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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8 MRSA0252.fna gi|49482253|ref|NC_002952.2| 55890 56621 + ERMA 1-732/732 =============== 0/0 100.00 100.00 megares MEG_2785 Drugs:MLS:23S_rRNA_methyltransferases:ERMA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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9 MRSA0252.fna gi|49482253|ref|NC_002952.2| 56747 57529 - ANT3-DPRIME 1-783/783 =============== 0/0 100.00 100.00 megares MEG_925 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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10 MRSA0252.fna gi|49482253|ref|NC_002952.2| 152865 154217 + TET38 1-1353/1353 =============== 0/0 100.00 100.00 megares MEG_6981 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TET38
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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11 MRSA0252.fna gi|49482253|ref|NC_002952.2| 376045 376464 + MEPR 1-420/420 =============== 0/0 100.00 99.05 megares MEG_3836 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_regulator:MEPR
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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12 MRSA0252.fna gi|49482253|ref|NC_002952.2| 376556 377926 + MEPA 1-1371/1371 =============== 0/0 100.00 98.54 megares MEG_3834 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MEPA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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13 MRSA0252.fna gi|49482253|ref|NC_002952.2| 378032 378472 + MEPB 1-441/441 =============== 0/0 100.00 88.89 megares MEG_3835 Drugs:Multi-drug_resistance:Multi-drug_MATE_efflux_pump:MEPB
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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14 MRSA0252.fna gi|49482253|ref|NC_002952.2| 765853 766296 + AAC3 1-444/444 =============== 0/0 100.00 100.00 megares MEG_47 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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15 MRSA0252.fna gi|49482253|ref|NC_002952.2| 774312 774755 - MGRA 1-444/444 =============== 0/0 100.00 99.78 megares MEG_3943 Drugs:Multi-drug_resistance:MDR_regulator:MGRA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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16 MRSA0252.fna gi|49482253|ref|NC_002952.2| 782414 783580 + NORA 1-1167/1167 =============== 0/0 100.00 91.69 megares MEG_4209 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:NORA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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17 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1486310 1487665 - ARLS 1-1356/1356 =============== 0/0 100.00 98.38 megares MEG_1118 Drugs:Multi-drug_resistance:MDR_regulator:ARLS
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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18 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1487662 1488321 - ARLR 1-660/660 =============== 0/0 100.00 100.00 megares MEG_1114 Drugs:Multi-drug_resistance:MDR_regulator:ARLR
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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19 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1535528 1536919 - NORB 1-1392/1392 =============== 0/0 100.00 98.20 megares MEG_4210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:NORB
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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20 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1796513 1797244 + ERMA 1-732/732 =============== 0/0 100.00 100.00 megares MEG_2785 Drugs:MLS:23S_rRNA_methyltransferases:ERMA
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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21 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1797370 1798152 - ANT3-DPRIME 1-783/783 =============== 0/0 100.00 100.00 megares MEG_925 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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22 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1911593 1911973 - BLAI 1-381/381 =============== 0/0 100.00 100.00 megares MEG_1287 Drugs:betalactams:Penicillin_binding_protein_regulator:BLAI
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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23 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1911963 1913720 - BLAR 1-1758/1758 =============== 0/0 100.00 99.83 megares MEG_1302 Drugs:betalactams:Penicillin_binding_protein_regulator:BLAR
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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24 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1913785 1914672 + BLAZ 1-888/888 =============== 0/0 100.00 99.66 megares MEG_1408 Drugs:betalactams:Class_A_betalactamases:BLAZ
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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25 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1915805 1916605 - APH3-PRIME 1-801/801 =============== 0/0 100.00 99.00 megares MEG_1060 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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26 MRSA0252.fna gi|49482253|ref|NC_002952.2| 2338959 2340402 - LMRS 1-1443/1443 ========/====== 1/1 100.00 91.41 megares MEG_3599 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:LMRS
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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27 MRSA0252.fna gi|49482253|ref|NC_002952.2| 2488459 2488878 + FOSB 1-420/420 =============== 0/0 100.00 98.81 megares MEG_3009 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSB
b734db305578 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
iuc
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28 MRSA0252.fna gi|49482253|ref|NC_002952.2| 2622988 2624175 - DHAP 1-1188/1188 =============== 0/0 100.00 99.16 megares MEG_2614 Drugs:Phenicol:Phenicol_resistance_MFS_efflux_pumps:DHAP