Mercurial > repos > iuc > abricate

comparison abricate_list.xml @ 4:78c75f134c16 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 1127a471ad5d1a75c311fa3be581476f5d8f9339
author iuc
date Mon, 19 Mar 2018 10:42:19 -0400
parents 6e9aea89e388
children c2ef298da409
comparison
equal deleted inserted replaced
3:6e9aea89e388 4:78c75f134c16
1 <tool id="abricate_list" name="ABRicate List" version="0.7"> 1 <tool id="abricate_list" name="ABRicate List" version="@VERSION@">
2 <requirements> 2 <description>
3 <requirement type="package" version="0.7">abricate</requirement> 3 List all of abricate's available databases.
4 </requirements> 4 </description>
5 5 <macros>
6 <version_command>abricate --version</version_command> 6 <import>macros.xml</import>
7 </macros>
8 <expand macro="requirements" />
9 <expand macro="version_command" />
7 10
8 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
9 abricate --list > '$report' 12 abricate --list > '$report'
10 ]]></command> 13 ]]></command>
11 14
26 **What it does** 29 **What it does**
27 30
28 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. 31 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
29 ]]></help> 32 ]]></help>
30 33
31 <citations> 34 <expand macro="citations"/>
32 <citation type="bibtex">
33 @UNPUBLISHED{Seemann2016,
34 author = {Seemann, Torsten},
35 title = {ABRicate: mass screening of contigs for antiobiotic resistance genes},
36 year = {2016},
37 url = {https://github.com/tseemann/abricate},
38 }
39 </citation>
40 </citations>
41 </tool> 35 </tool>