Mercurial > repos > iuc > abricate
comparison abricate_list.xml @ 0:862f5a86854d draft
planemo upload commit 3fdc0150310db0a67769f9ce6ea85695d595b2ba-dirty
| author | iuc |
|---|---|
| date | Tue, 29 Nov 2016 14:52:34 -0500 |
| parents | |
| children | 15197951a756 |
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| -1:000000000000 | 0:862f5a86854d |
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| 1 <tool id="abricate_list" name="ABRicate List" version="0.1.0"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="0.3">abricate</requirement> | |
| 4 <requirement type="package" version="5.18.1">perl</requirement> | |
| 5 <requirement type="package" version="2.2.31">blast+</requirement> | |
| 6 </requirements> | |
| 7 | |
| 8 <version_command>abricate --version</version_command> | |
| 9 | |
| 10 <command detect_errors="exit_code"><![CDATA[ | |
| 11 abricate --list 2> "$report" | |
| 12 ]]></command> | |
| 13 | |
| 14 <inputs> | |
| 15 | |
| 16 </inputs> | |
| 17 | |
| 18 <outputs> | |
| 19 <data format="txt" name="report" label="${tool.name} - list of databases"/> | |
| 20 </outputs> | |
| 21 | |
| 22 <tests> | |
| 23 <test> | |
| 24 <output name="report" ftype="txt" file="output_list.txt" /> | |
| 25 </test> | |
| 26 </tests> | |
| 27 | |
| 28 <help><![CDATA[ | |
| 29 **What it does** | |
| 30 | |
| 31 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. | |
| 32 | |
| 33 ]]></help> | |
| 34 | |
| 35 <citations> | |
| 36 <citation type="bibtex"> | |
| 37 @UNPUBLISHED{Seemann2016, | |
| 38 author = "Seemann T", | |
| 39 title = "ABRicate: mass screening of contigs for antiobiotic resistance genes", | |
| 40 year = "2016", | |
| 41 note = "https://github.com/tseemann/abricate"} | |
| 42 </citation> | |
| 43 </citations> | |
| 44 </tool> |