Mercurial > repos > iuc > abricate
diff test-data/test.gbk @ 2:2aa02d2a6af3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
author | iuc |
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date | Tue, 18 Jul 2017 13:56:16 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.gbk Tue Jul 18 13:56:16 2017 -0400 @@ -0,0 +1,72 @@ +LOCUS STANORAX 1601 bp DNA linear BCT 27-MAY-1993 +DEFINITION Staphylococcus aureus fluoroquinolone resistance protein (norA) + gene, complete cds. +ACCESSION M97169 +VERSION M97169.1 +KEYWORDS fluoroquinolone resistance protein; norA gene. +SOURCE Staphylococcus aureus + ORGANISM Staphylococcus aureus + Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; + Staphylococcus. +REFERENCE 1 (bases 1 to 1601) + AUTHORS Kaatz,G.W., Seo,S.M. and Ruble,C.A. + TITLE Efflux-mediated fluoroquinolone resistance in Staphylococcus aureus + JOURNAL Antimicrob. Agents Chemother. 37 (5), 1086-1094 (1993) + PUBMED 8517696 +FEATURES Location/Qualifiers + source 1..1601 + /organism="Staphylococcus aureus" + /mol_type="genomic DNA" + /db_xref="taxon:1280" + gene 117..1412 + /gene="norA" + regulatory 117..122 + /regulatory_class="minus_35_signal" + /gene="norA" + /note="putative" + regulatory 141..146 + /regulatory_class="minus_10_signal" + /gene="norA" + CDS 246..1412 + /gene="norA" + /function="fluoroquinolone efflux" + /standard_name="NORA1199 wild-type gene" + /codon_start=1 + /transl_table=11 + /protein_id="AAA26658.1" + /translation="MNKQILVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV + AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG + MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY + FAGALGILAFIMSIVLIHDPKKVSTNGFQKLEPQLLTKINWKVFITPVILTLVLSFGL + SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL + IYSVIVLVLLVIADGYWTIMVISFVVFIGFDMIRPAITNYFSNIAGDRQGFAGGLNST + FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKQQDL" +ORIGIN + 1 ctagtagtat agtatgatta cttttttgca atttcatatg atcaatcccc tttattttaa + 61 tatgtcatta attatacaat taaatggaaa atagtgataa ttacaaagaa aaaatattgt + 121 caaatgtagc aatattgtaa tacaatatag aaacttttta cgaatattta gcatgaattg + 181 caatctgtcg tggaaaagaa aaataacagc ttgaagagtg acaagtagaa aaaagaggtg + 241 agcaaatgaa taaacagatt ttggtattat attttaatat tttcttaatt tttttaggta + 301 tcggtctagt gataccagtc ttacctgttt atttaaaaga tttggggtta actggtagtg + 361 atttaggatt attagttgct gctttcgcct tatctcaaat gattatatcg ccattcggtg + 421 gtacgttagc tgataaatta ggaaagaaat taattatatg tataggatta attttgtttt + 481 cagtgtcaga atttatgttt gctatcggtc agaatttttt aattttgatg ttatcaaggg + 541 ttatcggtgg tatgagtgct ggtatggtta tgcctggggt gacaggttta atagctgata + 601 tttcaccaag ccatcaaaaa gcaaaaaact ttggctacat gtcagcgatt atcaattcag + 661 gattcatttt aggaccaggg attggtggat ttatggcaga agtttcacat cgtatgccat + 721 tttattttgc aggtgcatta ggtattctag catttataat gtcaattgta ttgattcacg + 781 accctaaaaa agtttcgaca aatggattcc aaaagttgga gccacaattg ctaacgaaaa + 841 ttaactggaa agtgtttatt acaccagtta ttctaacact tgtattatcg tttggtttat + 901 ctgcatttga aacattgtat tcactataca cagctgacaa ggtaaattat tcacctaaag + 961 atatttcgat tgcaattaca ggtggcggta tctttggtgc acttttccaa atttatttct + 1021 ttgataaatt tatgaaatac ttctctgagt taacatttat tgcatggtca ttaatatatt + 1081 cagttattgt attagtgcta ttagttattg ccgatggtta ctggacaatt atggtaataa + 1141 gctttgttgt ctttatcggg ttcgatatga taagacctgc tattacaaat tatttttcaa + 1201 atattgctgg tgatagacag ggatttgcag gtgggttaaa ctcaacattc actagcatgg + 1261 ggaattttat aggtccttta atcgcaggtg cgttatttga tgtgcacatt gaagccccaa + 1321 tttatatggc tataggtgtg tcattagctg gtgttgtcat tgttttaatt gaaaagcaac + 1381 atagagctaa gttaaaacaa caagatttgt aatatcgcac atggttgtca ttcgattaat + 1441 gtttttcgac aactaaagca tttcaaaata agcatcgatt ttcttacaat tatagtgaag + 1501 aaaagtcgat gctttaaatt tataaagatt aaaaactttt aaatgtttta gtctttatat + 1561 ttaaatgtta tatgtaacaa aaaatgattt tgagtaataa a +//