Mercurial > repos > iuc > abricate
diff abricate_list.xml @ 4:78c75f134c16 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 1127a471ad5d1a75c311fa3be581476f5d8f9339
author | iuc |
---|---|
date | Mon, 19 Mar 2018 10:42:19 -0400 |
parents | 6e9aea89e388 |
children | c2ef298da409 |
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--- a/abricate_list.xml Mon Sep 04 02:47:12 2017 -0400 +++ b/abricate_list.xml Mon Mar 19 10:42:19 2018 -0400 @@ -1,9 +1,12 @@ -<tool id="abricate_list" name="ABRicate List" version="0.7"> - <requirements> - <requirement type="package" version="0.7">abricate</requirement> - </requirements> - - <version_command>abricate --version</version_command> +<tool id="abricate_list" name="ABRicate List" version="@VERSION@"> + <description> + List all of abricate's available databases. + </description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ abricate --list > '$report' @@ -28,14 +31,5 @@ ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. ]]></help> - <citations> - <citation type="bibtex"> -@UNPUBLISHED{Seemann2016, - author = {Seemann, Torsten}, - title = {ABRicate: mass screening of contigs for antiobiotic resistance genes}, - year = {2016}, - url = {https://github.com/tseemann/abricate}, -} - </citation> - </citations> + <expand macro="citations"/> </tool>