Mercurial > repos > iuc > abricate
diff abricate_list.xml @ 0:862f5a86854d draft
planemo upload commit 3fdc0150310db0a67769f9ce6ea85695d595b2ba-dirty
author | iuc |
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date | Tue, 29 Nov 2016 14:52:34 -0500 |
parents | |
children | 15197951a756 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/abricate_list.xml Tue Nov 29 14:52:34 2016 -0500 @@ -0,0 +1,44 @@ +<tool id="abricate_list" name="ABRicate List" version="0.1.0"> + <requirements> + <requirement type="package" version="0.3">abricate</requirement> + <requirement type="package" version="5.18.1">perl</requirement> + <requirement type="package" version="2.2.31">blast+</requirement> + </requirements> + + <version_command>abricate --version</version_command> + + <command detect_errors="exit_code"><![CDATA[ + abricate --list 2> "$report" + ]]></command> + + <inputs> + + </inputs> + + <outputs> + <data format="txt" name="report" label="${tool.name} - list of databases"/> + </outputs> + + <tests> + <test> + <output name="report" ftype="txt" file="output_list.txt" /> + </test> + </tests> + + <help><![CDATA[ +**What it does** + +ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. + + ]]></help> + + <citations> + <citation type="bibtex"> + @UNPUBLISHED{Seemann2016, + author = "Seemann T", + title = "ABRicate: mass screening of contigs for antiobiotic resistance genes", + year = "2016", + note = "https://github.com/tseemann/abricate"} + </citation> + </citations> +</tool>