Mercurial > repos > iuc > abricate
view abricate_list.xml @ 2:2aa02d2a6af3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
author | iuc |
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date | Tue, 18 Jul 2017 13:56:16 -0400 |
parents | 15197951a756 |
children | 6e9aea89e388 |
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<tool id="abricate_list" name="ABRicate List" version="0.5"> <requirements> <requirement type="package" version="0.5">abricate</requirement> </requirements> <version_command>abricate --version</version_command> <command detect_errors="exit_code"><![CDATA[ abricate --list 2> '$report' ]]></command> <inputs> </inputs> <outputs> <data name="report" format="txt" label="${tool.name} - list of databases"/> </outputs> <tests> <test> <output name="report" ftype="txt" file="output_list.txt" compare="contains"/> </test> </tests> <help><![CDATA[ **What it does** ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. ]]></help> <citations> <citation type="bibtex"> @UNPUBLISHED{Seemann2016, author = {Seemann, Torsten}, title = {ABRicate: mass screening of contigs for antiobiotic resistance genes}, year = {2016}, url = {https://github.com/tseemann/abricate}, } </citation> </citations> </tool>