Mercurial > repos > iuc > aegean_locuspocus

comparison test-data/canon-output_test3.gff3 @ 0:c4ac24510b55 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
author iuc
date Sun, 03 Jan 2021 14:58:58 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:c4ac24510b55
1 ##gff-version 3
2 ##sequence-region Chr1 1 30427671
3 Chr1 TAIR10 gene 3631 5899 . + . ID=gene1;Note=protein_coding_gene;Name=AT1G01010
4 Chr1 TAIR10 mRNA 3631 5899 . + . ID=mRNA1;Parent=gene1;Name=AT1G01010.1;index=1
5 Chr1 TAIR10 five_prime_UTR 3631 3759 . + . Parent=mRNA1
6 Chr1 TAIR10 exon 3631 3913 . + . Parent=mRNA1
7 Chr1 . start_codon 3760 3762 . + . Parent=mRNA1
8 Chr1 TAIR10 CDS 3760 3913 . + 0 ID=CDS1;Parent=mRNA1
9 Chr1 . intron 3914 3995 . + . Parent=mRNA1
10 Chr1 TAIR10 exon 3996 4276 . + . Parent=mRNA1
11 Chr1 TAIR10 CDS 3996 4276 . + 2 ID=CDS1;Parent=mRNA1
12 Chr1 . intron 4277 4485 . + . Parent=mRNA1
13 Chr1 TAIR10 exon 4486 4605 . + . Parent=mRNA1
14 Chr1 TAIR10 CDS 4486 4605 . + 0 ID=CDS1;Parent=mRNA1
15 Chr1 . intron 4606 4705 . + . Parent=mRNA1
16 Chr1 TAIR10 exon 4706 5095 . + . Parent=mRNA1
17 Chr1 TAIR10 CDS 4706 5095 . + 0 ID=CDS1;Parent=mRNA1
18 Chr1 . intron 5096 5173 . + . Parent=mRNA1
19 Chr1 TAIR10 exon 5174 5326 . + . Parent=mRNA1
20 Chr1 TAIR10 CDS 5174 5326 . + 0 ID=CDS1;Parent=mRNA1
21 Chr1 . intron 5327 5438 . + . Parent=mRNA1
22 Chr1 TAIR10 CDS 5439 5630 . + 0 ID=CDS1;Parent=mRNA1
23 Chr1 TAIR10 exon 5439 5899 . + . Parent=mRNA1
24 Chr1 . stop_codon 5628 5630 . + . Parent=mRNA1
25 Chr1 TAIR10 three_prime_UTR 5631 5899 . + . Parent=mRNA1
26 ###
27 Chr1 TAIR10 gene 5928 8737 . - . ID=gene2;Note=protein_coding_gene;Name=AT1G01020
28 Chr1 TAIR10 mRNA 5928 8737 . - . ID=mRNA2;Parent=gene2;Name=AT1G01020.1;index=1
29 Chr1 TAIR10 three_prime_UTR 5928 6263 . - . Parent=mRNA2
30 Chr1 TAIR10 exon 5928 6263 . - . Parent=mRNA2
31 Chr1 . intron 6264 6436 . - . Parent=mRNA2
32 Chr1 TAIR10 three_prime_UTR 6437 6914 . - . Parent=mRNA2
33 Chr1 TAIR10 exon 6437 7069 . - . Parent=mRNA2
34 Chr1 . stop_codon 6915 6917 . - . Parent=mRNA2
35 Chr1 TAIR10 CDS 6915 7069 . - 2 ID=CDS2;Parent=mRNA2
36 Chr1 TAIR10 CDS 7157 7232 . - 0 ID=CDS2;Parent=mRNA2
37 Chr1 TAIR10 exon 7157 7232 . - . Parent=mRNA2
38 Chr1 . intron 7233 7383 . - . Parent=mRNA2
39 Chr1 TAIR10 CDS 7384 7450 . - 1 ID=CDS2;Parent=mRNA2
40 Chr1 TAIR10 exon 7384 7450 . - . Parent=mRNA2
41 Chr1 TAIR10 CDS 7564 7649 . - 0 ID=CDS2;Parent=mRNA2
42 Chr1 TAIR10 exon 7564 7649 . - . Parent=mRNA2
43 Chr1 TAIR10 CDS 7762 7835 . - 2 ID=CDS2;Parent=mRNA2
44 Chr1 TAIR10 exon 7762 7835 . - . Parent=mRNA2
45 Chr1 TAIR10 CDS 7942 7987 . - 0 ID=CDS2;Parent=mRNA2
46 Chr1 TAIR10 exon 7942 7987 . - . Parent=mRNA2
47 Chr1 TAIR10 CDS 8236 8325 . - 0 ID=CDS2;Parent=mRNA2
48 Chr1 TAIR10 exon 8236 8325 . - . Parent=mRNA2
49 Chr1 TAIR10 CDS 8417 8464 . - 0 ID=CDS2;Parent=mRNA2
50 Chr1 TAIR10 exon 8417 8464 . - . Parent=mRNA2
51 Chr1 TAIR10 CDS 8571 8666 . - 0 ID=CDS2;Parent=mRNA2
52 Chr1 TAIR10 exon 8571 8737 . - . Parent=mRNA2
53 Chr1 . start_codon 8664 8666 . - . Parent=mRNA2
54 Chr1 TAIR10 five_prime_UTR 8667 8737 . - . Parent=mRNA2
55 Chr1 TAIR10 mRNA 6790 8737 . - . ID=mRNA3;Parent=gene2;Name=AT1G01020.2;index=1
56 Chr1 TAIR10 three_prime_UTR 6790 7069 . - . Parent=mRNA3
57 Chr1 TAIR10 exon 6790 7069 . - . Parent=mRNA3
58 Chr1 . intron 7070 7156 . - . Parent=mRNA2,mRNA3
59 Chr1 TAIR10 three_prime_UTR 7157 7314 . - . Parent=mRNA3
60 Chr1 TAIR10 exon 7157 7450 . - . Parent=mRNA3
61 Chr1 . stop_codon 7315 7317 . - . Parent=mRNA3
62 Chr1 TAIR10 CDS 7315 7450 . - 1 ID=CDS3;Parent=mRNA3
63 Chr1 . intron 7451 7563 . - . Parent=mRNA2,mRNA3
64 Chr1 TAIR10 CDS 7564 7649 . - 0 ID=CDS3;Parent=mRNA3
65 Chr1 TAIR10 exon 7564 7649 . - . Parent=mRNA3
66 Chr1 . intron 7650 7761 . - . Parent=mRNA2,mRNA3
67 Chr1 TAIR10 CDS 7762 7835 . - 2 ID=CDS3;Parent=mRNA3
68 Chr1 TAIR10 exon 7762 7835 . - . Parent=mRNA3
69 Chr1 . intron 7836 7941 . - . Parent=mRNA2,mRNA3
70 Chr1 TAIR10 CDS 7942 7987 . - 0 ID=CDS3;Parent=mRNA3
71 Chr1 TAIR10 exon 7942 7987 . - . Parent=mRNA3
72 Chr1 . intron 7988 8235 . - . Parent=mRNA2,mRNA3
73 Chr1 TAIR10 CDS 8236 8325 . - 0 ID=CDS3;Parent=mRNA3
74 Chr1 TAIR10 exon 8236 8325 . - . Parent=mRNA3
75 Chr1 . intron 8326 8416 . - . Parent=mRNA2,mRNA3
76 Chr1 TAIR10 CDS 8417 8464 . - 0 ID=CDS3;Parent=mRNA3
77 Chr1 TAIR10 exon 8417 8464 . - . Parent=mRNA3
78 Chr1 . intron 8465 8570 . - . Parent=mRNA2,mRNA3
79 Chr1 TAIR10 CDS 8571 8666 . - 0 ID=CDS3;Parent=mRNA3
80 Chr1 TAIR10 exon 8571 8737 . - . Parent=mRNA3
81 Chr1 . start_codon 8664 8666 . - . Parent=mRNA3
82 Chr1 TAIR10 five_prime_UTR 8667 8737 . - . Parent=mRNA3
83 ###
84 Chr1 TAIR10 gene 11649 13714 . - . ID=gene3;Note=protein_coding_gene;Name=AT1G01030
85 Chr1 TAIR10 mRNA 11649 13714 . - . ID=mRNA4;Parent=gene3;Name=AT1G01030.1;index=1
86 Chr1 TAIR10 three_prime_UTR 11649 11863 . - . Parent=mRNA4
87 Chr1 TAIR10 exon 11649 13173 . - . Parent=mRNA4
88 Chr1 . stop_codon 11864 11866 . - . Parent=mRNA4
89 Chr1 TAIR10 CDS 11864 12940 . - 0 Parent=mRNA4
90 Chr1 . start_codon 12938 12940 . - . Parent=mRNA4
91 Chr1 TAIR10 five_prime_UTR 12941 13173 . - . Parent=mRNA4
92 Chr1 . intron 13174 13334 . - . Parent=mRNA4
93 Chr1 TAIR10 five_prime_UTR 13335 13714 . - . Parent=mRNA4
94 Chr1 TAIR10 exon 13335 13714 . - . Parent=mRNA4
95 ###
96 Chr1 TAIR10 gene 23146 31227 . + . ID=gene4;Note=protein_coding_gene;Name=AT1G01040
97 Chr1 TAIR10 mRNA 23146 31227 . + . ID=mRNA5;Parent=gene4;Name=AT1G01040.1;index=1
98 Chr1 TAIR10 five_prime_UTR 23146 23518 . + . Parent=mRNA5
99 Chr1 TAIR10 exon 23146 24451 . + . Parent=mRNA5
100 Chr1 . start_codon 23519 23521 . + . Parent=mRNA5
101 Chr1 TAIR10 CDS 23519 24451 . + 0 ID=CDS4;Parent=mRNA5
102 Chr1 . intron 24452 24541 . + . Parent=mRNA5
103 Chr1 TAIR10 exon 24542 24655 . + . Parent=mRNA5
104 Chr1 TAIR10 CDS 24542 24655 . + 0 ID=CDS4;Parent=mRNA5
105 Chr1 . intron 24656 24751 . + . Parent=mRNA5
106 Chr1 TAIR10 exon 24752 24962 . + . Parent=mRNA5
107 Chr1 TAIR10 CDS 24752 24962 . + 0 ID=CDS4;Parent=mRNA5
108 Chr1 . intron 24963 25040 . + . Parent=mRNA5
109 Chr1 TAIR10 exon 25041 25435 . + . Parent=mRNA5
110 Chr1 TAIR10 CDS 25041 25435 . + 2 ID=CDS4;Parent=mRNA5
111 Chr1 . intron 25436 25523 . + . Parent=mRNA5
112 Chr1 TAIR10 exon 25524 25743 . + . Parent=mRNA5
113 Chr1 TAIR10 CDS 25524 25743 . + 0 ID=CDS4;Parent=mRNA5
114 Chr1 . intron 25744 25824 . + . Parent=mRNA5
115 Chr1 TAIR10 exon 25825 25997 . + . Parent=mRNA5
116 Chr1 TAIR10 CDS 25825 25997 . + 2 ID=CDS4;Parent=mRNA5
117 Chr1 . intron 25998 26080 . + . Parent=mRNA5
118 Chr1 TAIR10 exon 26081 26203 . + . Parent=mRNA5
119 Chr1 TAIR10 CDS 26081 26203 . + 0 ID=CDS4;Parent=mRNA5
120 Chr1 . intron 26204 26291 . + . Parent=mRNA5
121 Chr1 TAIR10 exon 26292 26452 . + . Parent=mRNA5
122 Chr1 TAIR10 CDS 26292 26452 . + 0 ID=CDS4;Parent=mRNA5
123 Chr1 . intron 26453 26542 . + . Parent=mRNA5
124 Chr1 TAIR10 exon 26543 26776 . + . Parent=mRNA5
125 Chr1 TAIR10 CDS 26543 26776 . + 1 ID=CDS4;Parent=mRNA5
126 Chr1 . intron 26777 26861 . + . Parent=mRNA5
127 Chr1 TAIR10 exon 26862 27012 . + . Parent=mRNA5
128 Chr1 TAIR10 CDS 26862 27012 . + 1 ID=CDS4;Parent=mRNA5
129 Chr1 . intron 27013 27098 . + . Parent=mRNA5
130 Chr1 TAIR10 exon 27099 27281 . + . Parent=mRNA5
131 Chr1 TAIR10 CDS 27099 27281 . + 0 ID=CDS4;Parent=mRNA5
132 Chr1 . intron 27282 27371 . + . Parent=mRNA5
133 Chr1 TAIR10 exon 27372 27533 . + . Parent=mRNA5
134 Chr1 TAIR10 CDS 27372 27533 . + 0 ID=CDS4;Parent=mRNA5
135 Chr1 . stop_codon 27531 27533 . + . Parent=mRNA5
136 ###