Mercurial > repos > iuc > aegean_parseval

comparison test-data/TAIR9_GFF3_genes.gff @ 0:1b52f0c8ad7f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
author iuc
date Sun, 03 Jan 2021 14:58:02 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:1b52f0c8ad7f
1 Chr1 TAIR9 chromosome 1 30427671 . . . ID=Chr1;Name=Chr1
2 Chr1 TAIR9 gene 3631 5899 . + . ID=AT1G01010;Note=protein_coding_gene;Name=AT1G01010
3 Chr1 TAIR9 mRNA 3631 5899 . + . ID=AT1G01010.1;Parent=AT1G01010;Name=AT1G01010.1;Index=1
4 Chr1 TAIR9 protein 3760 5630 . + . ID=AT1G01010.1-Protein;Name=AT1G01010.1;Derives_from=AT1G01010.1
5 Chr1 TAIR9 exon 3631 3913 . + . Parent=AT1G01010.1
6 Chr1 TAIR9 five_prime_UTR 3631 3759 . + . Parent=AT1G01010.1
7 Chr1 TAIR9 CDS 3760 3913 . + 0 Parent=AT1G01010.1,AT1G01010.1-Protein;
8 Chr1 TAIR9 exon 3996 4276 . + . Parent=AT1G01010.1
9 Chr1 TAIR9 CDS 3996 4276 . + 2 Parent=AT1G01010.1,AT1G01010.1-Protein;
10 Chr1 TAIR9 exon 4486 4605 . + . Parent=AT1G01010.1
11 Chr1 TAIR9 CDS 4486 4605 . + 0 Parent=AT1G01010.1,AT1G01010.1-Protein;
12 Chr1 TAIR9 exon 4706 5095 . + . Parent=AT1G01010.1
13 Chr1 TAIR9 CDS 4706 5095 . + 0 Parent=AT1G01010.1,AT1G01010.1-Protein;
14 Chr1 TAIR9 exon 5174 5326 . + . Parent=AT1G01010.1
15 Chr1 TAIR9 CDS 5174 5326 . + 0 Parent=AT1G01010.1,AT1G01010.1-Protein;
16 Chr1 TAIR9 exon 5439 5899 . + . Parent=AT1G01010.1
17 Chr1 TAIR9 CDS 5439 5630 . + 0 Parent=AT1G01010.1,AT1G01010.1-Protein;
18 Chr1 TAIR9 three_prime_UTR 5631 5899 . + . Parent=AT1G01010.1
19 Chr1 TAIR9 gene 5928 8737 . - . ID=AT1G01020;Note=protein_coding_gene;Name=AT1G01020
20 Chr1 TAIR9 mRNA 5928 8737 . - . ID=AT1G01020.1;Parent=AT1G01020;Name=AT1G01020.1;Index=1
21 Chr1 TAIR9 protein 6915 8666 . - . ID=AT1G01020.1-Protein;Name=AT1G01020.1;Derives_from=AT1G01020.1
22 Chr1 TAIR9 five_prime_UTR 8667 8737 . - . Parent=AT1G01020.1
23 Chr1 TAIR9 CDS 8571 8666 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
24 Chr1 TAIR9 exon 8571 8737 . - . Parent=AT1G01020.1
25 Chr1 TAIR9 CDS 8417 8464 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
26 Chr1 TAIR9 exon 8417 8464 . - . Parent=AT1G01020.1
27 Chr1 TAIR9 CDS 8236 8325 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
28 Chr1 TAIR9 exon 8236 8325 . - . Parent=AT1G01020.1
29 Chr1 TAIR9 CDS 7942 7987 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
30 Chr1 TAIR9 exon 7942 7987 . - . Parent=AT1G01020.1
31 Chr1 TAIR9 CDS 7762 7835 . - 2 Parent=AT1G01020.1,AT1G01020.1-Protein;
32 Chr1 TAIR9 exon 7762 7835 . - . Parent=AT1G01020.1
33 Chr1 TAIR9 CDS 7564 7649 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
34 Chr1 TAIR9 exon 7564 7649 . - . Parent=AT1G01020.1
35 Chr1 TAIR9 CDS 7384 7450 . - 1 Parent=AT1G01020.1,AT1G01020.1-Protein;
36 Chr1 TAIR9 exon 7384 7450 . - . Parent=AT1G01020.1
37 Chr1 TAIR9 CDS 7157 7232 . - 0 Parent=AT1G01020.1,AT1G01020.1-Protein;
38 Chr1 TAIR9 exon 7157 7232 . - . Parent=AT1G01020.1
39 Chr1 TAIR9 CDS 6915 7069 . - 2 Parent=AT1G01020.1,AT1G01020.1-Protein;
40 Chr1 TAIR9 three_prime_UTR 6437 6914 . - . Parent=AT1G01020.1
41 Chr1 TAIR9 exon 6437 7069 . - . Parent=AT1G01020.1
42 Chr1 TAIR9 three_prime_UTR 5928 6263 . - . Parent=AT1G01020.1
43 Chr1 TAIR9 exon 5928 6263 . - . Parent=AT1G01020.1
44 Chr1 TAIR9 mRNA 6790 8737 . - . ID=AT1G01020.2;Parent=AT1G01020;Name=AT1G01020.2;Index=1
45 Chr1 TAIR9 protein 7315 8666 . - . ID=AT1G01020.2-Protein;Name=AT1G01020.2;Derives_from=AT1G01020.2
46 Chr1 TAIR9 five_prime_UTR 8667 8737 . - . Parent=AT1G01020.2
47 Chr1 TAIR9 CDS 8571 8666 . - 0 Parent=AT1G01020.2,AT1G01020.2-Protein;
48 Chr1 TAIR9 exon 8571 8737 . - . Parent=AT1G01020.2
49 Chr1 TAIR9 CDS 8417 8464 . - 0 Parent=AT1G01020.2,AT1G01020.2-Protein;
50 Chr1 TAIR9 exon 8417 8464 . - . Parent=AT1G01020.2
51 Chr1 TAIR9 CDS 8236 8325 . - 0 Parent=AT1G01020.2,AT1G01020.2-Protein;
52 Chr1 TAIR9 exon 8236 8325 . - . Parent=AT1G01020.2
53 Chr1 TAIR9 CDS 7942 7987 . - 0 Parent=AT1G01020.2,AT1G01020.2-Protein;
54 Chr1 TAIR9 exon 7942 7987 . - . Parent=AT1G01020.2
55 Chr1 TAIR9 CDS 7762 7835 . - 2 Parent=AT1G01020.2,AT1G01020.2-Protein;
56 Chr1 TAIR9 exon 7762 7835 . - . Parent=AT1G01020.2
57 Chr1 TAIR9 CDS 7564 7649 . - 0 Parent=AT1G01020.2,AT1G01020.2-Protein;
58 Chr1 TAIR9 exon 7564 7649 . - . Parent=AT1G01020.2
59 Chr1 TAIR9 CDS 7315 7450 . - 1 Parent=AT1G01020.2,AT1G01020.2-Protein;
60 Chr1 TAIR9 three_prime_UTR 7157 7314 . - . Parent=AT1G01020.2
61 Chr1 TAIR9 exon 7157 7450 . - . Parent=AT1G01020.2
62 Chr1 TAIR9 three_prime_UTR 6790 7069 . - . Parent=AT1G01020.2
63 Chr1 TAIR9 exon 6790 7069 . - . Parent=AT1G01020.2
64 Chr1 TAIR9 gene 11649 13714 . - . ID=AT1G01030;Note=protein_coding_gene;Name=AT1G01030
65 Chr1 TAIR9 mRNA 11649 13714 . - . ID=AT1G01030.1;Parent=AT1G01030;Name=AT1G01030.1;Index=1
66 Chr1 TAIR9 protein 11864 12940 . - . ID=AT1G01030.1-Protein;Name=AT1G01030.1;Derives_from=AT1G01030.1
67 Chr1 TAIR9 five_prime_UTR 13335 13714 . - . Parent=AT1G01030.1
68 Chr1 TAIR9 exon 13335 13714 . - . Parent=AT1G01030.1
69 Chr1 TAIR9 five_prime_UTR 12941 13173 . - . Parent=AT1G01030.1
70 Chr1 TAIR9 CDS 11864 12940 . - 0 Parent=AT1G01030.1,AT1G01030.1-Protein;
71 Chr1 TAIR9 three_prime_UTR 11649 11863 . - . Parent=AT1G01030.1
72 Chr1 TAIR9 exon 11649 13173 . - . Parent=AT1G01030.1
73 Chr1 TAIR9 gene 23146 31227 . + . ID=AT1G01040;Note=protein_coding_gene;Name=AT1G01040
74 Chr1 TAIR9 mRNA 23146 31227 . + . ID=AT1G01040.1;Parent=AT1G01040;Name=AT1G01040.1;Index=1
75 Chr1 TAIR9 protein 23519 31079 . + . ID=AT1G01040.1-Protein;Name=AT1G01040.1;Derives_from=AT1G01040.1
76 Chr1 TAIR9 exon 23146 24451 . + . Parent=AT1G01040.1
77 Chr1 TAIR9 five_prime_UTR 23146 23518 . + . Parent=AT1G01040.1
78 Chr1 TAIR9 CDS 23519 24451 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
79 Chr1 TAIR9 exon 24542 24655 . + . Parent=AT1G01040.1
80 Chr1 TAIR9 CDS 24542 24655 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
81 Chr1 TAIR9 exon 24752 24962 . + . Parent=AT1G01040.1
82 Chr1 TAIR9 CDS 24752 24962 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
83 Chr1 TAIR9 exon 25041 25435 . + . Parent=AT1G01040.1
84 Chr1 TAIR9 CDS 25041 25435 . + 2 Parent=AT1G01040.1,AT1G01040.1-Protein;
85 Chr1 TAIR9 exon 25524 25743 . + . Parent=AT1G01040.1
86 Chr1 TAIR9 CDS 25524 25743 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
87 Chr1 TAIR9 exon 25825 25997 . + . Parent=AT1G01040.1
88 Chr1 TAIR9 CDS 25825 25997 . + 2 Parent=AT1G01040.1,AT1G01040.1-Protein;
89 Chr1 TAIR9 exon 26081 26203 . + . Parent=AT1G01040.1
90 Chr1 TAIR9 CDS 26081 26203 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
91 Chr1 TAIR9 exon 26292 26452 . + . Parent=AT1G01040.1
92 Chr1 TAIR9 CDS 26292 26452 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
93 Chr1 TAIR9 exon 26543 26776 . + . Parent=AT1G01040.1
94 Chr1 TAIR9 CDS 26543 26776 . + 1 Parent=AT1G01040.1,AT1G01040.1-Protein;
95 Chr1 TAIR9 exon 26862 27012 . + . Parent=AT1G01040.1
96 Chr1 TAIR9 CDS 26862 27012 . + 1 Parent=AT1G01040.1,AT1G01040.1-Protein;
97 Chr1 TAIR9 exon 27099 27281 . + . Parent=AT1G01040.1
98 Chr1 TAIR9 CDS 27099 27281 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;
99 Chr1 TAIR9 exon 27372 27533 . + . Parent=AT1G01040.1
100 Chr1 TAIR9 CDS 27372 27533 . + 0 Parent=AT1G01040.1,AT1G01040.1-Protein;