Mercurial > repos > iuc > amplican
annotate test-data/RunParameters.txt @ 1:8c1bba8d544a draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 902dc45a1d133b86b99f27d9902d642e475a3e87"
author | iuc |
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date | Mon, 04 Oct 2021 10:03:20 +0000 |
parents | 71adaaace336 |
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rev | line source |
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0
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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1 Config file: /tmp/tmpg3fcuksp/files/f/0/2/dataset_f0207835-503b-4340-b985-c28af77332e6.dat |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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2 Average Quality: 0 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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3 Minimum Quality: 20 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
4 Write Alignments: txt |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
5 Fastq files Mode: 0 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
6 Gap Opening: 25 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
7 Gap Extension: 0 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
8 Consensus: TRUE |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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9 Normalize: guideRNA, Group |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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10 PRIMER DIMER buffer: 30 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
11 Cut buffer: 5 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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12 Scoring Matrix: |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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13 ,A,C,G,T |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
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14 A,5,-4,-4,-4 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
15 C,-4,5,-4,-4 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
16 G,-4,-4,5,-4 |
71adaaace336
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
iuc
parents:
diff
changeset
|
17 T,-4,-4,-4,5 |