Mercurial > repos > iuc > amplican

diff test-data/raw_events.csv @ 0:71adaaace336 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
author: iuc
date: Wed, 22 Sep 2021 21:01:40 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/raw_events.csv	Wed Sep 22 21:01:40 2021 +0000
@@ -0,0 +1,95 @@
+seqnames,start,end,width,strand,originally,replacement,type,read_id,score,counts,readType
+ID_1,108,127,20,+,"",AAAAAAAAAAAAAAAAAAAA,insertion,1,597,3,FALSE
+ID_1,112,131,20,+,"",AAAAAAAAAAAAAAAAAAAA,insertion,2,557,2,FALSE
+ID_1,42,107,66,+,"","",deletion,1,597,3,FALSE
+ID_1,38,111,74,+,"","",deletion,2,557,2,FALSE
+ID_1,24,173,150,+,"","",deletion,3,193,1,FALSE
+ID_1,34,117,84,+,"","",deletion,4,532,1,FALSE
+ID_1,31,31,1,+,A,G,mismatch,1,597,3,FALSE
+ID_1,163,163,1,+,T,A,mismatch,1,597,3,FALSE
+ID_1,31,31,1,+,A,G,mismatch,2,557,2,FALSE
+ID_1,163,163,1,+,T,A,mismatch,2,557,2,FALSE
+ID_1,23,23,1,+,T,G,mismatch,3,193,1,FALSE
+ID_1,31,31,1,+,A,G,mismatch,4,532,1,FALSE
+ID_1,171,171,1,+,G,A,mismatch,4,532,1,FALSE
+ID_1,176,176,1,+,A,T,mismatch,3,193,1,FALSE
+ID_1,177,177,1,+,G,C,mismatch,3,193,1,FALSE
+ID_1,108,127,20,-,"",AAAAAAAAAAAAAAAAAAAA,insertion,1,597,3,FALSE
+ID_1,112,131,20,-,"",AAAAAAAAAAAAAAAAAAAA,insertion,2,557,2,FALSE
+ID_1,42,107,66,-,"","",deletion,1,597,3,FALSE
+ID_1,38,111,74,-,"","",deletion,2,557,2,FALSE
+ID_1,24,173,150,-,"","",deletion,3,193,1,FALSE
+ID_1,34,117,84,-,"","",deletion,4,532,1,FALSE
+ID_1,31,31,1,-,A,G,mismatch,1,597,3,FALSE
+ID_1,163,163,1,-,T,A,mismatch,1,597,3,FALSE
+ID_1,31,31,1,-,A,G,mismatch,2,557,2,FALSE
+ID_1,163,163,1,-,T,A,mismatch,2,557,2,FALSE
+ID_1,23,23,1,-,T,G,mismatch,3,193,1,FALSE
+ID_1,31,31,1,-,A,G,mismatch,4,532,1,FALSE
+ID_1,171,171,1,-,G,A,mismatch,4,532,1,FALSE
+ID_1,176,176,1,-,A,T,mismatch,3,193,1,FALSE
+ID_1,177,177,1,-,G,C,mismatch,3,193,1,FALSE
+ID_2,115,127,13,-,"","",deletion,1,845,3,FALSE
+ID_2,106,114,9,-,"","",deletion,2,865,2,FALSE
+ID_2,101,105,5,-,"","",deletion,3,885,1,FALSE
+ID_2,115,127,13,+,"","",deletion,1,845,3,FALSE
+ID_2,106,114,9,+,"","",deletion,2,865,2,FALSE
+ID_2,101,105,5,+,"","",deletion,3,885,1,FALSE
+ID_3,171,171,1,+,"",T,insertion,1,819,5,FALSE
+ID_3,74,89,16,+,"",CCCCCCCCCCCCCCCC,insertion,3,860,1,FALSE
+ID_3,66,83,18,+,"","",deletion,1,819,5,FALSE
+ID_3,63,68,6,+,"","",deletion,2,885,2,FALSE
+ID_3,81,86,6,+,"","",deletion,2,885,2,FALSE
+ID_3,26,42,17,+,"","",deletion,3,860,1,FALSE
+ID_3,21,176,156,+,"","",deletion,4,190,1,FALSE
+ID_3,167,167,1,+,G,T,mismatch,1,819,5,FALSE
+ID_3,168,168,1,+,C,T,mismatch,1,819,5,FALSE
+ID_3,169,169,1,+,C,T,mismatch,1,819,5,FALSE
+ID_3,170,170,1,+,A,T,mismatch,1,819,5,FALSE
+ID_3,171,171,1,-,"",T,insertion,1,819,5,FALSE
+ID_3,74,89,16,-,"",CCCCCCCCCCCCCCCC,insertion,3,860,1,FALSE
+ID_3,66,83,18,-,"","",deletion,1,819,5,FALSE
+ID_3,63,68,6,-,"","",deletion,2,885,2,FALSE
+ID_3,81,86,6,-,"","",deletion,2,885,2,FALSE
+ID_3,26,42,17,-,"","",deletion,3,860,1,FALSE
+ID_3,21,176,156,-,"","",deletion,4,190,1,FALSE
+ID_3,167,167,1,-,G,T,mismatch,1,819,5,FALSE
+ID_3,168,168,1,-,C,T,mismatch,1,819,5,FALSE
+ID_3,169,169,1,-,C,T,mismatch,1,819,5,FALSE
+ID_3,170,170,1,-,A,T,mismatch,1,819,5,FALSE
+ID_4,118,125,8,+,"",GGGGGGGG,insertion,2,767,2,FALSE
+ID_4,109,126,18,+,"",ACCACACGTGCATCGTAC,insertion,3,833,1,FALSE
+ID_4,37,68,32,+,"","",deletion,1,497,4,FALSE
+ID_4,91,98,8,+,"","",deletion,1,497,4,FALSE
+ID_4,114,115,2,+,"","",deletion,1,497,4,FALSE
+ID_4,147,166,20,+,"","",deletion,1,497,4,FALSE
+ID_4,36,62,27,+,"","",deletion,2,767,2,FALSE
+ID_4,52,63,12,+,"","",deletion,3,833,1,FALSE
+ID_4,102,102,1,+,C,A,mismatch,1,497,4,FALSE
+ID_4,104,104,1,+,G,C,mismatch,1,497,4,FALSE
+ID_4,145,145,1,+,C,G,mismatch,1,497,4,FALSE
+ID_4,159,159,1,+,T,A,mismatch,2,767,2,FALSE
+ID_4,167,167,1,+,A,T,mismatch,2,767,2,FALSE
+ID_4,162,162,1,+,G,C,mismatch,3,833,1,FALSE
+ID_4,164,164,1,+,A,T,mismatch,3,833,1,FALSE
+ID_4,167,167,1,+,A,G,mismatch,3,833,1,FALSE
+ID_4,106,106,1,+,C,G,mismatch,1,497,4,FALSE
+ID_4,107,107,1,+,C,A,mismatch,1,497,4,FALSE
+ID_4,112,112,1,+,A,T,mismatch,1,497,4,FALSE
+ID_4,113,113,1,+,A,G,mismatch,1,497,4,FALSE
+ID_4,116,126,11,-,"",ACTGACTGCTG,insertion,1,626,4,FALSE
+ID_4,118,125,8,-,"",GGGGGGGG,insertion,2,767,2,FALSE
+ID_4,109,126,18,-,"",ACCACACGTGCATCGTAC,insertion,3,824,1,FALSE
+ID_4,37,68,32,-,"","",deletion,1,626,4,FALSE
+ID_4,147,166,20,-,"","",deletion,1,626,4,FALSE
+ID_4,36,62,27,-,"","",deletion,2,767,2,FALSE
+ID_4,52,63,12,-,"","",deletion,3,824,1,FALSE
+ID_4,145,145,1,-,C,G,mismatch,1,626,4,FALSE
+ID_4,159,159,1,-,T,A,mismatch,2,767,2,FALSE
+ID_4,167,167,1,-,A,T,mismatch,2,767,2,FALSE
+ID_4,1,1,1,-,G,A,mismatch,3,824,1,FALSE
+ID_4,162,162,1,-,G,C,mismatch,3,824,1,FALSE
+ID_4,164,164,1,-,A,T,mismatch,3,824,1,FALSE
+ID_4,167,167,1,-,A,G,mismatch,3,824,1,FALSE
+ID_5,121,121,1,+,G,A,mismatch,2,961,2,TRUE
+ID_5,121,121,1,-,G,A,mismatch,2,961,2,TRUE