Mercurial > repos > iuc > ampvis2_alpha_diversity

diff alpha_diversity.xml @ 6:289d6299bd2e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit cb30e4b8d695e096753fe7cb5056b118b25a87fd
author iuc
date Mon, 26 Aug 2024 16:16:20 +0000
parents 21b85417e4c3
children 77000428c613
line wrap: on
line diff
--- a/alpha_diversity.xml	Fri Aug 16 09:04:58 2024 +0000
+++ b/alpha_diversity.xml	Mon Aug 26 16:16:20 2024 +0000
@@ -39,7 +39,7 @@
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <output name="alphadiv">
                 <assert_contents>
-                    <has_line line="SampleID&#9;Plant&#9;Date&#9;Year&#9;Period&#9;Reads&#9;ObservedOTUs&#9;Shannon&#9;Simpson&#9;invSimpson"/>
+                    <has_line line="SampleID&#9;Plant&#9;Date&#9;Year&#9;Period&#9;Reads&#9;uniqueOTUs&#9;Shannon&#9;Simpson&#9;invSimpson"/>
                     <has_text text="16SAMP-536&#9;"/>
                     <has_text text="&#9;Aalborg West&#9;"/>
                     <has_n_lines n="68"/>
@@ -54,11 +54,11 @@
             <param name="rarefy" value="500"/>
             <output name="alphadiv">
                 <assert_contents>
-                    <has_line line="SampleID&#9;Plant&#9;Date&#9;Year&#9;Period&#9;RawReads&#9;Reads&#9;ObservedOTUs&#9;Shannon&#9;Chao1&#9;ACE"/>
+                    <has_line line="SampleID&#9;Plant&#9;Date&#9;Year&#9;Period&#9;RawReads&#9;Reads&#9;uniqueOTUs&#9;Shannon&#9;Simpson&#9;invSimpson&#9;Chao1&#9;ACE"/>
                     <has_text text="16SAMP-536&#9;"/>
                     <has_text text="&#9;Aalborg West&#9;"/>
                     <has_n_lines n="68"/>
-                    <has_n_columns n="11"/>
+                    <has_n_columns n="13"/>
                     <has_text text="&#9;500&#9;"/>
                 </assert_contents>
             </output>
@@ -98,4 +98,4 @@
     <expand macro="citations">
         <citation type="doi">10.1371/journal.pcbi.1003531</citation>
     </expand>
-</tool>
\ No newline at end of file
+</tool>