Mercurial > repos > iuc > ampvis2_export_fasta

comparison export_fasta.xml @ 2:0ddd34d51029 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 09b56ef3e09ad6c5923c88616fea5cbd77d87616
author iuc
date Mon, 18 Dec 2023 09:42:04 +0000
parents e10b5eebd415
children
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1:e10b5eebd415 2:0ddd34d51029
32 <param name="data" value="AalborgWWTPs-complete.rds" ftype="ampvis2"/> 32 <param name="data" value="AalborgWWTPs-complete.rds" ftype="ampvis2"/>
33 <param name="tax" value="true"/> 33 <param name="tax" value="true"/>
34 <output name="output" ftype="fasta"> 34 <output name="output" ftype="fasta">
35 <assert_contents> 35 <assert_contents>
36 <has_text text=">OTU_2397; k__Bacteria; p__Chloroflexi; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae; g__uncultured; s__"/> 36 <has_text text=">OTU_2397; k__Bacteria; p__Chloroflexi; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae; g__uncultured; s__"/>
37 <has_size size="106282"/> 37 <has_size value="125478"/>
38 </assert_contents> 38 </assert_contents>
39 </output> 39 </output>
40 </test> 40 </test>
41 </tests> 41 </tests>
42 <help><![CDATA[ 42 <help><![CDATA[
44 ============ 44 ============
45 45
46 Export sequences from an ampvis2 object and optionally add taxonomy to the fasta header lines. 46 Export sequences from an ampvis2 object and optionally add taxonomy to the fasta header lines.
47 47
48 The Galaxy tool calls the `amp_export_fasta 48 The Galaxy tool calls the `amp_export_fasta
49 <https://madsalbertsen.github.io/ampvis2/reference/amp_export_fasta.html>`_ function 49 <https://kasperskytte.github.io/ampvis2/reference/amp_export_fasta.html>`_ function
50 of the ampvis2 package. 50 of the ampvis2 package.
51 51
52 Input 52 Input
53 ===== 53 =====
54 54