Mercurial > repos > iuc > ampvis2_frequency
diff frequency.xml @ 3:cdba4eab5a54 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 5b6fb9641a1320e13aba367c4e7bc52ae064acc6
author | iuc |
---|---|
date | Mon, 26 Feb 2024 07:54:14 +0000 |
parents | b8ecbc50af78 |
children | ac9564dcdb99 |
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--- a/frequency.xml Mon Dec 18 09:38:02 2023 +0000 +++ b/frequency.xml Mon Feb 26 07:54:14 2024 +0000 @@ -13,9 +13,10 @@ data <- readRDS("$data") plot <- amp_frequency( data, - #if $group_by - group_by = "$group_by", - #end if + ## https://github.com/KasperSkytte/ampvis2/issues/167 + ## #if $group_by + ## group_by = "$group_by", + ## #end if ## tax_class = NULL, tax_empty = "$tax_empty", tax_aggregate = "$tax_aggregate", @@ -29,7 +30,8 @@ </configfiles> <inputs> <expand macro="rds_metadata_input_macro"/> - <expand macro="metadata_select_discrete" argument="group_by" label="Group the samples by "/> + <!-- https://github.com/KasperSkytte/ampvis2/issues/167 + <expand macro="metadata_select_discrete" argument="group_by" label="Group the samples by "/> --> <expand macro="tax_empty_macro"/> <expand macro="taxlevel_macro" argument="tax_aggregate" label="The taxonomic level to aggregate the OTUs"> <option value="OTU" selected="true">OTU/ASV</option> @@ -48,12 +50,13 @@ <output name="plot" value="AalborgWWTPs-frequency.pdf" ftype="pdf"/> </test> <!-- group_by --> + <!-- https://github.com/KasperSkytte/ampvis2/issues/167 <test expect_num_outputs="1"> <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> <param name="group_by" value="Plant"/> <output name="plot" value="AalborgWWTPs-frequency-group_by.pdf" ftype="pdf"/> - </test> + </test> --> </tests> <help><![CDATA[ What it does