Mercurial > repos > iuc > ampvis2_heatmap
changeset 8:c980e4bd48f2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 9fe04d29ea604a152144908dbd20c0754695a025
| author | iuc |
|---|---|
| date | Sat, 16 Nov 2024 19:58:32 +0000 |
| parents | 9dab85e62cf2 |
| children | |
| files | heatmap.xml test-data/AalborgWWTPs-heatmap-blue-green.pdf test-data/AalborgWWTPs-heatmap-red-yellow.pdf |
| diffstat | 3 files changed, 18 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/heatmap.xml Fri Oct 25 14:19:23 2024 +0000 +++ b/heatmap.xml Sat Nov 16 19:58:32 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="ampvis2_heatmap" name="ampvis2 heatmap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" license="MIT"> +<tool id="ampvis2_heatmap" name="ampvis2 heatmap" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@" license="MIT"> <description></description> <macros> <import>macros.xml</import> @@ -63,7 +63,7 @@ #if $scale_by scale_by = "$scale_by", #end if - ## color_vector = NULL + color_vector = c("$color_palette_start", "$color_palette_end"), ## round = 1, #if $output_options.out_format == "tabular" textmap = TRUE, @@ -150,6 +150,8 @@ </param> </when> </conditional> + <param argument="color_palette_start" type="color" label="Start color for the heatmap" help="Choose the start color for the heatmap."/> + <param argument="color_palette_end" type="color" label="End color for the heatmap" help="Choose the end color for the heatmap."/> <!-- https://github.com/KasperSkytte/ampvis2/issues/168 if this is possible again reuse: metadata_sample_or_variable_select ? --> <expand macro="metadata_sample_select" argument="normalise_by" label="Normalize counts by a variable or a specific sample"/> @@ -294,6 +296,19 @@ </conditional> <output name="plot" value="AalborgWWTPs-heatmap-plot_foo_file.pdf" ftype="pdf" compare="sim_size"/> </test> + <!-- test with different color palettes --> + <test expect_num_outputs="1"> + <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> + <param name="color_palette_start" value="red"/> + <param name="color_palette_end" value="yellow"/> + <output name="plot" value="AalborgWWTPs-heatmap-red-yellow.pdf" ftype="pdf" compare="sim_size"/> + </test> + <test expect_num_outputs="1"> + <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> + <param name="color_palette_start" value="blue"/> + <param name="color_palette_end" value="green"/> + <output name="plot" value="AalborgWWTPs-heatmap-blue-green.pdf" ftype="pdf" compare="sim_size"/> + </test> </tests> <help><![CDATA[ @@ -330,4 +345,4 @@ If table output is chosen the data presented in the heatmap is written into a tabular dataset. ]]></help> <expand macro="citations"/> -</tool> \ No newline at end of file +</tool>