Mercurial > repos > iuc > ampvis2_ordinate

diff ordinate.xml @ 4:811df76f4f26 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit ab75ba7665d7fb5c18ad08dfbba92b273f991dfc
author iuc
date Sat, 16 Mar 2024 11:32:14 +0000
parents 75e025c9bc10
children
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--- a/ordinate.xml	Mon Feb 26 07:50:05 2024 +0000
+++ b/ordinate.xml	Sat Mar 16 11:32:14 2024 +0000
@@ -242,8 +242,8 @@
         <test expect_num_outputs="2">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <param name="output_screeplot" value="true"/>
-            <output name="plot" value="AalborgWWTPs-ordinate.pdf" ftype="pdf"/>
-            <output name="screeplot" value="AalborgWWTPs-ordinate-screeplot.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate.pdf" ftype="pdf" compare="sim_size"/>
+            <output name="screeplot" value="AalborgWWTPs-ordinate-screeplot.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- RDA + caption -->
         <test expect_num_outputs="1">
@@ -255,7 +255,7 @@
                 <param name="transform" value="chi.square"/>
                 <param name="constrain" value="Plant"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-ordinate-rda.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-rda.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- MMDS + unfirac (which requires a tree) -->
         <test expect_num_outputs="1">
@@ -265,7 +265,7 @@
                 <param name="type" value="MMDS"/>
                 <param name="distmeasure" value="unifrac"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-ordinate-nmds.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-nmds.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- color, shape and colorframe -->
         <test expect_num_outputs="1">
@@ -275,7 +275,7 @@
             <param name="sample_shape_by" value="Plant"/>
             <param name="sample_colorframe" value="Year"/>
             <param name="sample_colorframe_label" value="Year"/>
-            <output name="plot" value="AalborgWWTPs-ordinate-color-shape-frame.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-color-shape-frame.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- label, trajectory -->
         <test expect_num_outputs="1">
@@ -283,14 +283,14 @@
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="sample_label_by" value="Plant"/>
             <param name="sample_trajectory" value="Year"/>
-            <output name="plot" value="AalborgWWTPs-ordinate-label-traj.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-label-traj.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- trajectory group -->
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="sample_trajectory_group" value="Plant"/>
-            <output name="plot" value="AalborgWWTPs-ordinate-label-traj-group.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-label-traj-group.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- species plot -->
         <test expect_num_outputs="1">
@@ -302,21 +302,21 @@
                 <param name="species_label_taxonomy" value="Family"/>
                 <param name="species_label_size" value="4"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-ordinate-species.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-species.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- envfit factor-->
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="envfit_factor" value="Plant"/>
-            <output name="plot" value="AalborgWWTPs-ordinate-envfit-factor.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-envfit-factor.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- envfit numeric-->
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="envfit_numeric" value="Year"/>
-            <output name="plot" value="AalborgWWTPs-ordinate-envfit-num.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-ordinate-envfit-num.pdf" ftype="pdf" compare="sim_size"/>
         </test>
     </tests>
     <help><![CDATA[