Mercurial > repos > iuc > ampvis2_rankabundance

comparison test-data/rich-sparse.biom @ 0:132d2a794152 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 7c0ecbffdb5e993f5af7e3b52c424c2761fb91d3"
author iuc
date Mon, 04 Apr 2022 10:20:48 +0000
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-1:000000000000 0:132d2a794152
1 {
2 "id":"w00asdt",
3 "format": "1.0.0",
4 "format_url": "http://biom-format.org",
5 "type": "OTU table",
6 "generated_by": "QIIME revision XYZ",
7 "date": "2011-12-19T19:00:00",
8 "rows":[
9 {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}},
10 {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}},
11 {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}},
12 {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}},
13 {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}
14 ],
15 "columns":[
16 {"id":"Sample1", "metadata":{
17 "BarcodeSequence":"CGCTTATCGAGA",
18 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
19 "BODY_SITE":"gut",
20 "Description":"human gut"}},
21 {"id":"Sample2", "metadata":{
22 "BarcodeSequence":"CATACCAGTAGC",
23 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
24 "BODY_SITE":"gut",
25 "Description":"human gut"}},
26 {"id":"Sample3", "metadata":{
27 "BarcodeSequence":"CTCTCTACCTGT",
28 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
29 "BODY_SITE":"gut",
30 "Description":"human gut"}},
31 {"id":"Sample4", "metadata":{
32 "BarcodeSequence":"CTCTCGGCCTGT",
33 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
34 "BODY_SITE":"skin",
35 "Description":"human skin"}},
36 {"id":"Sample5", "metadata":{
37 "BarcodeSequence":"CTCTCTACCAAT",
38 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
39 "BODY_SITE":"skin",
40 "Description":"human skin"}},
41 {"id":"Sample6", "metadata":{
42 "BarcodeSequence":"CTAACTACCAAT",
43 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
44 "BODY_SITE":"skin",
45 "Description":"human skin"}}
46 ],
47 "matrix_type": "sparse",
48 "matrix_element_type": "int",
49 "shape": [5, 6],
50 "data":[[0,2,1],
51 [1,0,5],
52 [1,1,1],
53 [1,3,2],
54 [1,4,3],
55 [1,5,1],
56 [2,2,1],
57 [2,3,4],
58 [2,5,2],
59 [3,0,2],
60 [3,1,1],
61 [3,2,1],
62 [3,5,1],
63 [4,1,1],
64 [4,2,1]
65 ]
66 }