# HG changeset patch # User iuc # Date 1649067795 0 # Node ID 65cc862ec3c447d28e7691468819b04d170782a5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 7c0ecbffdb5e993f5af7e3b52c424c2761fb91d3" diff -r 000000000000 -r 65cc862ec3c4 TODO --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TODO Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,6 @@ +use duplicated options instead of tokens to define defaults + + +detailed data for boxplot (see heatmap) + + diff -r 000000000000 -r 65cc862ec3c4 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,271 @@ + + 2.7.17 + 0 + 22.01 + + + ampvis + + + r-ampvis2 + r-readr + + /dev/null | grep -v -i "WARNING: ") + ]]> + + + + + 10.1101/299537 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ggsave("$plot", + print(plot), + device="$output_options.out_format" + #if str($output_options.plot_width) != '' + , width = $output_options.plot_width + #end if + #if str($output_options.plot_height) != '' + , height = $output_options.plot_height + #end if + ) + + + + + + + + + + + +
+ + + + + + + + +
+ + + + #if str($rarefy) != "" + , rarefy = $rarefy + #end if + + + + + + + + + + + An ampvis2 RDS dataset obtained by the ``ampvis2: load`` tool (or ``ampvis2: mergereplicates`` or one of the + ``ampvis2: subset ...`` tools). + + + The metadata list output of the ``ampvis2: load`` tool (or ``ampvis2: mergereplicates`` or the + ``ampvis2: subset sample`` tool). This input is only used for providing + values to the parameters alowing to select metadata variables or values. + + + +Preserving relative abundances in a subset of larger data +========================================================= + +By default the raw read counts in the abundance matrix are normalised +(transformed to percentages) by some ampvis2 plotting tools (for +example ``ampvis2: heatmap``, ``ampvis2: timeseries``, and more). +If this is applied to data generated by one of the ``ampvis2: subset ...`` tools +this means that the relative +abundances shown will be calculated based on the remaining taxa after the +subset, not including the removed taxa, if any. To circumvent this, enable +``normalise`` when subsetting with the ``ampvis2: subset ...``` tools, +and then disable ``normalise`` in the plotting tool. This will +transform the OTU counts to relative abundances BEFORE the subset. + + \ No newline at end of file diff -r 000000000000 -r 65cc862ec3c4 rarecurve.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rarecurve.xml Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,97 @@ + + + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + `_ function +of the ampvis2 package. + +Input +===== + +@HELP_RDS_INPUT@ + +@HELP_METADATA_LIST_INPUT@ + +Output +====== + +Rarefaction curves in the chosen output format. + + ]]> + + \ No newline at end of file diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-boxplot-group.pdf Binary file test-data/AalborgWWTPs-boxplot-group.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-boxplot-point.pdf Binary file test-data/AalborgWWTPs-boxplot-point.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-boxplot.pdf Binary file test-data/AalborgWWTPs-boxplot.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-complete.rds Binary file test-data/AalborgWWTPs-complete.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-core-multiple.pdf Binary file test-data/AalborgWWTPs-core-multiple.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-core.pdf Binary file test-data/AalborgWWTPs-core.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-frequency-group_by.pdf Binary file test-data/AalborgWWTPs-frequency-group_by.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-frequency.pdf Binary file test-data/AalborgWWTPs-frequency.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-functions.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-functions.tsv Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,80 @@ +Genus Foo Bar +g__Acetitomaculum A Z +g__Ruminococcaceae UCG-005 A Z +g__Dyadobacter A Z +g__Nitrosomonas A Z +g__Tetrasphaera A Z +g__Desulforegula A Z +g__Rummeliibacillus A Z +g__ A Z +g__Fusicatenibacter A Z +g__Ruminiclostridium 1 A Z +g__uncultured A Z +g__Brooklawnia A Z +g__Sulfuritalea A Z +g__Lactobacillus A Z +g__Flavobacterium A Z +g__Acidicaldus A Z +g__Candidatus Defluviifilum A Z +g__Ruminococcaceae UCG-010 A Z +g__SBR2113 A Z +g__Subdoligranulum A Z +g__Ramlibacter B Z +g__Bosea B Z +g__Desulfobulbus B Z +g__Nocardioides B Z +g__Fusibacter B Z +g__SM1F10 B Z +g__Hyphomicrobium B Z +g__Meiothermus B Z +g__Trichococcus B Y +g__oca15 B Y +g__Simplicispira B Y +g__Sandaracinus B Y +g__OM27 clade B Y +g__Collinsella B Y +g__MNG7 B Y +g__Roseomonas B Y +g__Pirellula B Y +g__Clostridium sensu stricto 1 B Y +g__Acetoanaerobium B Y +g__Nitrospira B Y +g__Propioniciclava B Y +g__Parabacteroides C Y +g__Actinomyces C Y +g__Aeromicrobium C Y +g__Clostridium sensu stricto 6 C Y +g__Reyranella C Y +g__Proteiniclasticum C Y +g__B1-K1A-105 C Y +g__Prevotellaceae UCG-004 C Y +g__Haliangium C Y +g__Ureibacillus C Y +g__Ruminococcus 2 C Y +g__CYCU-0281 C Y +g__Parafilimonas C Y +g__Aestuariimicrobium C Y +g__Diaminobutyricimonas C Y +g__K2-78 C Y +g__Erysipelatoclostridium C Y +g__CL500-29 marine group C Y +g__Bacteroides C Y +g__Tessaracoccus C Y +g__Gordonia C Y +g__Senegalimassilia C Y +g__Atopobium C Y +g__Proteiniphilum C Y +g__Uliginosibacterium C Y +g__WCHB1-50 C Y +g__Christensenellaceae R-7 group C X +g__Fodinibacter C X +g__Defluviicoccus C X +g__Acidovorax C X +g__Salana C X +g__Propionimicrobium C X +g__Litorilinea C X +g__Faecalitalea C X +g__Ruminiclostridium 5 C X +g__Rivicola C X +g__[Eubacterium] coprostanoligenes group C X +g__Lewinella C X diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-heatmap-group-facet.pdf Binary file test-data/AalborgWWTPs-heatmap-group-facet.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-heatmap-group-facet.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-heatmap-group-facet.tsv Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,11 @@ +"Aalborg East 2006" "Aalborg East 2007" "Aalborg East 2008" "Aalborg East 2009" "Aalborg East 2010" "Aalborg East 2011" "Aalborg East 2012" "Aalborg East 2013" "Aalborg East 2014" "Aalborg East 2015" "Aalborg West 2006" "Aalborg West 2007" "Aalborg West 2008" "Aalborg West 2009" "Aalborg West 2010" "Aalborg West 2011" "Aalborg West 2012" "Aalborg West 2013" "Aalborg West 2014" "Aalborg West 2015" +"Proteobacteria" 38.1319941850736 35.9175566196596 35.3239223028173 34.9909501829368 36.3283102328281 38.9915608421962 53.8529383953324 51.3460117968074 72.8722023985104 57.4344068148402 54.2087542087542 36.4326282804544 38.4757369086407 38.3005233882427 37.9516676472635 40.6258026017424 38.6472843550883 44.6513837857578 60.526398421492 45.2994925859604 +"Actinobacteria" 16.1262929321795 18.8003924243249 19.7958105485988 12.3985441180767 11.9508628506455 11.9822773321894 12.658277703168 9.86692802463733 4.41749530915451 5.99609488982366 17.8451178451178 30.1393785089437 27.2165206926683 27.0923034080929 28.0991209423852 18.3670127700203 20.8878481743068 14.4816058069532 5.78450375894784 6.93249190968154 +"Chloroflexi" 18.3131199353417 13.271226587611 18.1723687926502 29.7622211645584 27.2162188095204 27.4083281864652 13.3425292037346 12.0421436922346 2.84378751176108 1.05381359276388 5.72390572390572 9.29625277451364 13.2781161639047 9.09181786374769 8.90144026478223 13.2039431913116 11.6630983081279 10.2302102712301 9.44167249733746 12.9289629664804 +"Bacteroidetes" 15.238944647955 17.0944898458844 4.80841552255416 6.79789110506974 7.21184338673076 12.2970476460921 12.0216954506151 19.8089694348484 15.1180034568227 26.7842680520852 10.4377104377104 7.90899595247421 4.19318035043356 6.73335761055059 5.58986985476623 11.2276978159685 11.4612545797781 15.2032565168297 14.8111317970807 21.1241394277011 +"Firmicutes" 6.65926307960792 8.08826902584616 13.5323428478027 11.135420901698 12.2381391019829 5.3065353223222 4.15566119372564 5.39379512409247 2.50275820445282 2.65696422748934 6.73400673400673 7.45201723462593 6.59801488988521 10.8497740076687 7.68965190921149 4.23883518319609 4.98282022116985 5.50491710923881 2.78564846131452 2.80406275115902 +"Acidobacteria" 1.84522886779123 3.19309844412278 0.579562724509533 1.22263018757176 1.22019363164889 1.8556042232708 2.61733996209427 0.818911905713214 1.77946201792775 4.74365552197578 3.03030303030303 3.46814205509858 2.58723846405261 4.34169469257189 7.1137753294489 6.57976369495166 6.87742567426134 6.0700195803001 4.28737081122707 9.42431811091215 +"Planctomycetes" 0.746563781302169 0.25464448503398 0.987168692856751 0.411589894060679 0.492479742080341 0.564736695897598 0.0730994152046784 0.152535023867842 0.0235849056603774 0.0250752256770311 1.34680134680135 3.09766288027158 4.52112645443821 1.78687459389214 2.47741727664007 2.23035684449218 1.84033791082559 1.3257701894156 1.01973806934665 0.584070896715898 +"Deinococcus-Thermus" 1.45963179413928 1.00870720718181 5.11548610677814 1.03259577383117 0.684345869495339 0.424454945159917 0.0955583622050142 0 0.0474171268233897 0.685625086716673 0 0 0 0 0 0 0 0 0 0 +"Hydrogenedentes" 0.134770889487871 0.244052637669659 0.152267354395014 0.155400155400155 0.199004975124378 0.308893572463899 0.402906470230555 0.0861326442721792 0.0747487181080226 0.185094894105122 0 0.120772946859903 0.4920049200492 0.562660211783019 0.404258953481751 0.500747105859888 1.36061070732636 0.873921616081284 0.298532298518384 0.373761440277151 +"WCHB1-60" 0.789762842230565 0.41040519763924 0.129960317460317 0.0556483027267668 0.136612021857924 0 0.0730994152046784 0 0 0 0 0.233385559472516 0.879805929046964 0.21706688373355 0.836894586894587 1.25864184270199 1.14445526079798 0.629254175715777 0.0949491695303551 0.148135364082208 diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-heatmap-normalise.pdf Binary file 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65cc862ec3c4 test-data/AalborgWWTPs-mergereplicates.rds Binary file test-data/AalborgWWTPs-mergereplicates.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-metadata.list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-metadata.list Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,125 @@ +SampleID 16SAMP-747 TRUE character +SampleID 16S-AMP-1168 TRUE character +SampleID 16SAMP-4603 TRUE character +SampleID 16S-AMP-1149 TRUE character +SampleID 16SAMP-537 TRUE character +SampleID 16S-AMP-1114 TRUE character +SampleID 16SAMP-3893 TRUE character +SampleID 16SAMP-703 TRUE character +SampleID 16SAMP-638 TRUE character +SampleID 16SAMP-2611 TRUE character +SampleID 16S-AMP-1100 TRUE character +SampleID 16SAMP-608 TRUE character +SampleID 16SAMP-636 TRUE character +SampleID 16SAMP-13288 TRUE character +SampleID 16SAMP-719 TRUE character +SampleID 16S-AMP-1098 TRUE character +SampleID 16SAMP-536 TRUE character +SampleID 16S-AMP-1169 TRUE character +SampleID 16SAMP-635 TRUE character +SampleID 16SAMP-637 TRUE character +SampleID 16SAMP-717 TRUE character +SampleID 16S-AMP-1148 TRUE character +SampleID 16SAMP-735 TRUE character +SampleID 16SAMP-729 TRUE character +SampleID 16SAMP-738 TRUE character +SampleID 16SAMP-2613 TRUE character +SampleID 16SAMP-10925 TRUE character +SampleID 16SAMP-3913 TRUE character +SampleID 16SAMP-716 TRUE character +SampleID 16SAMP-726 TRUE character +SampleID 16SAMP-728 TRUE character +SampleID 16SAMP-625 TRUE character +SampleID 16SAMP-736 TRUE character +SampleID 16SAMP-13281 TRUE character +SampleID 16SAMP-626 TRUE character +SampleID 16SAMP-704 TRUE character +SampleID 16SAMP-2612 TRUE character +SampleID 16SAMP-746 TRUE character +SampleID 16SAMP-522 TRUE character +SampleID 16SAMP-516 TRUE character +SampleID 16S-AMP-1170 TRUE character +SampleID 16S-AMP-1099 TRUE character +SampleID 16SAMP-10932 TRUE character +SampleID 16SAMP-740 TRUE character +SampleID 16SAMP-739 TRUE character +SampleID 16SAMP-4597 TRUE character +SampleID 16SAMP-535 TRUE character +SampleID 16SAMP-3941 TRUE character +SampleID 16SAMP-3953 TRUE character +SampleID 16SAMP-720 TRUE character +SampleID 16SAMP-705 TRUE character +SampleID 16SAMP-10907 TRUE character +SampleID 16SAMP-538 TRUE character +SampleID 16SAMP-10911 TRUE character +SampleID 16SAMP-737 TRUE character +SampleID 16SAMP-4591 TRUE character +SampleID 16SAMP-745 TRUE character +SampleID 16SAMP-706 TRUE character +SampleID 16SAMP-3946 TRUE character +SampleID 16S-AMP-1101 TRUE character +SampleID 16SAMP-10896 TRUE character +SampleID 16SAMP-10891 TRUE character +SampleID 16SAMP-748 TRUE character +SampleID 16SAMP-725 TRUE character +SampleID 16SAMP-730 TRUE character +SampleID 16S-AMP-1107 TRUE character +SampleID 16SAMP-727 TRUE character +Plant Aalborg East FALSE character +Plant Aalborg West FALSE character +Date 14644 FALSE Date +Date 15831 FALSE Date +Date 16301 FALSE Date +Date 16006 FALSE Date +Date 14840 FALSE Date +Date 15740 FALSE Date +Date 16107 FALSE Date +Date 13183 FALSE Date +Date 15641 FALSE Date +Date 15009 FALSE Date +Date 15571 FALSE Date +Date 15275 FALSE Date +Date 15466 FALSE Date +Date 16475 FALSE Date +Date 13744 FALSE Date +Date 15374 FALSE Date +Date 14735 FALSE Date +Date 15936 FALSE Date +Date 13548 FALSE Date +Date 14005 FALSE Date +Date 14110 FALSE Date +Date 14279 FALSE Date +Date 15205 FALSE Date +Date 16735 FALSE Date +Date 16254 FALSE Date +Date 16476 FALSE Date +Date 13274 FALSE Date +Date 14370 FALSE Date +Date 14910 FALSE Date +Date 14545 FALSE Date +Date 16195 FALSE Date +Date 16300 FALSE Date +Date 16386 FALSE Date +Date 13814 FALSE Date +Date 13379 FALSE Date +Date 16671 FALSE Date +Date 14180 FALSE Date +Date 16105 FALSE Date +Date 13449 FALSE Date +Date 16387 FALSE Date +Date 16559 FALSE Date +Date 13913 FALSE Date +Year 2010 FALSE integer +Year 2013 FALSE integer +Year 2014 FALSE integer +Year 2006 FALSE integer +Year 2012 FALSE integer +Year 2011 FALSE integer +Year 2015 FALSE integer +Year 2007 FALSE integer +Year 2008 FALSE integer +Year 2009 FALSE integer +Period Winter FALSE character +Period Spring FALSE character +Period Summer FALSE character +Period Fall FALSE character diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-octave.pdf Binary file test-data/AalborgWWTPs-octave.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-octave.png Binary file test-data/AalborgWWTPs-octave.png has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-octave.svg --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-octave.svg Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,1247 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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-r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-color-shape-frame.pdf Binary file test-data/AalborgWWTPs-ordinate-color-shape-frame.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-envfit-factor.pdf Binary file test-data/AalborgWWTPs-ordinate-envfit-factor.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-envfit-num.pdf Binary file test-data/AalborgWWTPs-ordinate-envfit-num.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-label-traj-group.pdf Binary file test-data/AalborgWWTPs-ordinate-label-traj-group.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-label-traj.pdf Binary file test-data/AalborgWWTPs-ordinate-label-traj.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-nmds.pdf Binary file test-data/AalborgWWTPs-ordinate-nmds.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-rda.pdf Binary file test-data/AalborgWWTPs-ordinate-rda.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-screeplot.pdf Binary file test-data/AalborgWWTPs-ordinate-screeplot.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate-species.pdf Binary file test-data/AalborgWWTPs-ordinate-species.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-ordinate.pdf Binary file test-data/AalborgWWTPs-ordinate.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-otu_network-color_by.pdf Binary file test-data/AalborgWWTPs-otu_network-color_by.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-otu_network.pdf Binary file test-data/AalborgWWTPs-otu_network.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-rankabundance-nondefault.pdf Binary file test-data/AalborgWWTPs-rankabundance-nondefault.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-rankabundance.pdf Binary file test-data/AalborgWWTPs-rankabundance.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-rarecurve-color.pdf Binary file test-data/AalborgWWTPs-rarecurve-color.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-rarecurve-facet.pdf Binary file test-data/AalborgWWTPs-rarecurve-facet.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-rarecurve.pdf Binary file test-data/AalborgWWTPs-rarecurve.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-subset_samples.rds Binary file test-data/AalborgWWTPs-subset_samples.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-subset_taxa.rds Binary file test-data/AalborgWWTPs-subset_taxa.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-taxonomy.list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-taxonomy.list Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,495 @@ +k__Bacteria +p__Firmicutes +p__Bacteroidetes +p__Proteobacteria +p__Actinobacteria +p__Hydrogenedentes +p__Parcubacteria +p__Planctomycetes +p__Acidobacteria +p__Chloroflexi + +p__Saccharibacteria +p__Candidate division SR1 +p__Cyanobacteria +p__Synergistetes +p__Deinococcus-Thermus +p__Chlorobi +p__Verrucomicrobia +p__GOUTA4 +p__Nitrospirae +p__WCHB1-60 +p__Elusimicrobia +p__SM2F11 +p__TM6 +p__Armatimonadetes +p__Fusobacteria +p__Tenericutes +p__Lentisphaerae +p__Microgenomates +c__Clostridia +c__Cytophagia +c__Betaproteobacteria +c__Actinobacteria +c__Gammaproteobacteria +c__Deltaproteobacteria +c__Bacilli +c__ +c__Sphingobacteriia +c__Planctomycetacia +c__Holophagae +c__Chloroflexia +c__Caldilineae + +c__Anaerolineae +c__Flavobacteriia +c__Negativicutes +c__Alphaproteobacteria +c__Unknown Class +c__Cyanobacteria +c__Synergistia +c__Thermoleophilia +c__Acidimicrobiia +c__Bacteroidia +c__Phycisphaerae +c__WCHB1-50 +c__Deinococci +c__Ignavibacteria +c__Verrucomicrobiae +c__Coriobacteriia +c__TA18 +c__Acidobacteria +c__Nitrospira +c__Chlorobia +c__Elusimicrobia +c__Erysipelotrichia +c__BSV13 +c__Thermomicrobia +c__OPB35 soil group +c__Fusobacteriia +c__Mollicutes +c__PBS-III-20 +c__Chloroplast +o__Clostridiales +o__Cytophagales +o__Nitrosomonadales +o__Micrococcales +o__Xanthomonadales +o__Desulfobacterales +o__Bacillales +o__ +o__Sphingobacteriales +o__Planctomycetales +o__Holophagales +o__Propionibacteriales +o__Chloroflexales +o__PeM15 +o__Caldilineales +o__Rhodocyclales + +o__Myxococcales +o__Lactobacillales +o__Anaerolineales +o__Flavobacteriales +o__Selenomonadales +o__Rhodospirillales +o__Unknown Order +o__SubsectionIII +o__Burkholderiales +o__Rickettsiales +o__Rhizobiales +o__Synergistales +o__Gaiellales +o__Acidimicrobiales +o__Bacteroidales +o__Phycisphaerales +o__WCHB1-50 +o__Thermales +o__Ignavibacteriales +o__Bdellovibrionales +o__Verrucomicrobiales +o__Coriobacteriales +o__Subgroup 6 +o__Nitrospirales +o__WD2101 soil group +o__Actinomycetales +o__Chlorobiales +o__Subgroup 10 +o__Lineage IIb +o__Oligoflexales +o__Solirubrobacterales +o__Erysipelotrichales +o__Corynebacteriales +o__JG30-KF-CM45 +o__FW73 +o__Fusobacteriales +o__Mollicutes RF9 +o__Neisseriales +o__GR-WP33-30 +f__Lachnospiraceae +f__Ruminococcaceae +f__Cytophagaceae +f__Nitrosomonadaceae +f__Intrasporangiaceae +f__Xanthomonadaceae +f__Desulfobacteraceae +f__Planococcaceae +f__ +f__Dermatophilaceae +f__AKYH767 +f__Planctomycetaceae +f__Holophagaceae +f__Propionibacteriaceae +f__Roseiflexaceae +f__PeM15 +f__Caldilineaceae +f__Rhodocyclaceae + +f__Blfdi19 +f__Lactobacillaceae +f__Anaerolineaceae +f__Flavobacteriaceae +f__Veillonellaceae +f__Acetobacteraceae +f__mle1-27 +f__SBR2060 +f__FamilyI +f__Microbacteriaceae +f__Saprospiraceae +f__Comamonadaceae +f__TK34 +f__Bradyrhizobiaceae +f__Synergistaceae +f__Desulfobulbaceae +f__BVA77 +f__env.OPS 17 +f__Nocardioidaceae +f__DUNssu044 +f__Prevotellaceae +f__Family XII +f__Phycisphaeraceae +f__Chitinophagaceae +f__WCHB1-50 +f__Hyphomicrobiaceae +f__Thermaceae +f__Carnobacteriaceae +f__PHOS-HE36 +f__Family XIII +f__Sandaracinaceae +f__Bdellovibrionaceae +f__Mitochondria +f__Verrucomicrobiaceae +f__Coriobacteriaceae +f__Nordellaceae +f__Clostridiaceae 1 +f__Peptostreptococcaceae +f__Holosporaceae +f__Nitrospiraceae +f__Porphyromonadaceae +f__Actinomycetaceae +f__Family XI +f__Chlorobiaceae +f__NS9 marine group +f__Rhodospirillales Incertae Sedis +f__ABS-19 +f__Haliangiaceae +f__Bacillaceae +f__480-2 +f__Erysipelotrichaceae +f__Acidimicrobiaceae +f__Bacteroidaceae +f__Nocardiaceae +f__bacteriap25 +f__Christensenellaceae +f__Rhodospirillaceae +f__Beutenbergiaceae +f__Leptotrichiaceae +f__Oligoflexaceae +f__Neisseriaceae +f__AKIW1012 +f__Microthricaceae +f__OPB56 +g__Acetitomaculum +g__Ruminococcaceae UCG-005 +g__Dyadobacter +g__Nitrosomonas +g__Tetrasphaera + +g__Desulforegula +g__Rummeliibacillus +g__ +g__Fusicatenibacter +g__Ruminiclostridium 1 +g__uncultured +g__Brooklawnia +g__Sulfuritalea +g__Lactobacillus +g__Flavobacterium +g__Acidicaldus +g__Candidatus Defluviifilum +g__Ruminococcaceae UCG-010 +g__SBR2113 +g__Subdoligranulum +g__Ramlibacter +g__Bosea +g__Desulfobulbus +g__Nocardioides +g__Fusibacter +g__SM1F10 +g__Hyphomicrobium +g__Meiothermus +g__Trichococcus +g__oca15 +g__Simplicispira +g__Sandaracinus +g__OM27 clade +g__Collinsella +g__MNG7 +g__Roseomonas +g__Pirellula +g__Clostridium sensu stricto 1 +g__Acetoanaerobium +g__Nitrospira +g__Propioniciclava +g__Parabacteroides +g__Actinomyces +g__Aeromicrobium +g__Clostridium sensu stricto 6 +g__Reyranella +g__Proteiniclasticum +g__B1-K1A-105 +g__Prevotellaceae UCG-004 +g__Haliangium +g__Ureibacillus +g__Ruminococcus 2 +g__CYCU-0281 +g__Parafilimonas +g__Aestuariimicrobium +g__Diaminobutyricimonas +g__K2-78 +g__Erysipelatoclostridium +g__CL500-29 marine group +g__Bacteroides +g__Tessaracoccus +g__Gordonia +g__Senegalimassilia +g__Atopobium +g__Proteiniphilum +g__Uliginosibacterium +g__WCHB1-50 +g__Christensenellaceae R-7 group +g__Fodinibacter +g__Defluviicoccus +g__Acidovorax +g__Salana +g__Propionimicrobium +g__Litorilinea +g__Faecalitalea +g__Ruminiclostridium 5 +g__Rivicola +g__[Eubacterium] coprostanoligenes group +g__Lewinella +s__ + +s__sublineage I +s__cluster I +OTU_8735 +OTU_13382 +OTU_5516 +OTU_8315 +OTU_10522 +OTU_11040 +OTU_7263 +OTU_13379 +OTU_1418 +OTU_556 +OTU_6869 +OTU_10171 +OTU_2830 +OTU_4232 +OTU_12831 +OTU_613 +OTU_3625 +OTU_3605 +OTU_11148 +OTU_656 +OTU_4382 +OTU_3834 +OTU_13127 +OTU_4528 +OTU_4485 +OTU_12265 +OTU_11820 +OTU_4093 +OTU_8360 +OTU_15123 +OTU_11928 +OTU_11334 +OTU_4511 +OTU_3265 +OTU_2991 +OTU_522 +OTU_11832 +OTU_6358 +OTU_3611 +OTU_1408 +OTU_7471 +OTU_14124 +OTU_13012 +OTU_8113 +OTU_11414 +OTU_2232 +OTU_13504 +OTU_173 +OTU_11006 +OTU_9035 +OTU_8165 +OTU_1707 +OTU_4805 +OTU_7801 +OTU_6106 +OTU_9681 +OTU_4039 +OTU_4338 +OTU_1634 +OTU_684 +OTU_496 +OTU_3941 +OTU_4193 +OTU_9455 +OTU_7842 +OTU_13494 +OTU_1285 +OTU_132 +OTU_10641 +OTU_236 +OTU_462 +OTU_161 +OTU_13660 +OTU_9412 +OTU_7504 +OTU_318 +OTU_7070 +OTU_288 +OTU_2415 +OTU_95 +OTU_3982 +OTU_4278 +OTU_2887 +OTU_5684 +OTU_4220 +OTU_7051 +OTU_11398 +OTU_4669 +OTU_4697 +OTU_6765 +OTU_1066 +OTU_5907 +OTU_4933 +OTU_8885 +OTU_4226 +OTU_1821 +OTU_1794 +OTU_3925 +OTU_3353 +OTU_7163 +OTU_541 +OTU_1521 +OTU_14421 +OTU_2972 +OTU_8291 +OTU_289 +OTU_1306 +OTU_4839 +OTU_11689 +OTU_12665 +OTU_2085 +OTU_448 +OTU_6935 +OTU_190 +OTU_4458 +OTU_927 +OTU_5113 +OTU_1875 +OTU_9228 +OTU_1845 +OTU_6255 +OTU_1479 +OTU_14146 +OTU_6507 +OTU_7542 +OTU_13718 +OTU_4593 +OTU_2343 +OTU_8708 +OTU_2677 +OTU_9665 +OTU_81 +OTU_6422 +OTU_1612 +OTU_3216 +OTU_9248 +OTU_5187 +OTU_7882 +OTU_1543 +OTU_11775 +OTU_233 +OTU_4015 +OTU_8260 +OTU_9548 +OTU_5643 +OTU_1586 +OTU_3782 +OTU_2934 +OTU_14570 +OTU_11781 +OTU_3700 +OTU_6318 +OTU_2148 +OTU_2244 +OTU_7867 +OTU_14248 +OTU_12704 +OTU_364 +OTU_8245 +OTU_10847 +OTU_1151 +OTU_1998 +OTU_10321 +OTU_4721 +OTU_6237 +OTU_1972 +OTU_11364 +OTU_1816 +OTU_14842 +OTU_6533 +OTU_8887 +OTU_12690 +OTU_3097 +OTU_3257 +OTU_3161 +OTU_11903 +OTU_7508 +OTU_10969 +OTU_1801 +OTU_3488 +OTU_933 +OTU_3824 +OTU_777 +OTU_3169 +OTU_12385 +OTU_1496 +OTU_11294 +OTU_1968 +OTU_8832 +OTU_8652 +OTU_13621 +OTU_3043 +OTU_10760 +OTU_14173 +OTU_10746 +OTU_284 +OTU_5049 +OTU_2397 +OTU_2913 +OTU_9512 diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-timeseries-group.pdf Binary file test-data/AalborgWWTPs-timeseries-group.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-timeseries-tax.pdf Binary file test-data/AalborgWWTPs-timeseries-tax.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-timeseries.pdf Binary file test-data/AalborgWWTPs-timeseries.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-venn-group.pdf Binary file test-data/AalborgWWTPs-venn-group.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs-venn.pdf Binary file test-data/AalborgWWTPs-venn.pdf has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.fa Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,1879 @@ +>OTU_8735 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgagc gatggcgtac taatggaaga +agcttcggca gaaaaccggt gtacgccaga gcggcggatg ggtgagtaac gcgtggacaa +cctgccctgc actgggggat aacagctgga aacggctgtt aataccgcat atgcgcacga +tgccgcatgg cagagggcgg aaagatttat cggtgcagga tgggtccgcg tcggattagc +cagttggcgg ggtaacggcc caccaaagcg atgatccgta gccggcctga gagggcgatc +ggccacattg ggactgagac acggcccaaa ctcctacggg aggcagcagt gggggatatt +gcacaatggg ggaaaccctg atgcagcgac gccgcgtgag cgatgaagtg cttcggcatg +taaagctcta tcagcgggga agaagatgac ggtacccgac taagaagccc cggctaacta +cgtg +>OTU_13382 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggacgaggcc ccttcgggga +ccgagttagt ggcgaacggg tgagtaacgc gtgagcaacc tgcctttcag tgggggacaa +cagttggaaa cgactgctaa taccgcataa aactctaaga ggacatcctc agtgagtcaa +agatttattg ctgaaagatg ggctcgcgtc tgattagcta gttggcgggg taacggccca +ccaaggcgac gatcagtagc cggactgaga ggttgaacgg ccacattggg actgagatac +ggcccagact cctacgggag gcagcagtgg ggaatattgg gcaatggggg aaaccctgac +ccagcaacgc cgcgtgaagg aagaaggctt tcgggttgta aacttctttt accagggacg +aaggacgtga cggtacctgg agaaaaagcc acggctaact acgtg +>OTU_5516 +gatgaacgct agcggcaggc ttaatacatg caaggcgagg gggcatttcg gtgtcaccgt +cgtacgggtg cgtaacgcgt atgcaaccta cctttaactg ggggatagcc cggggaaacc +cggattaata ccgcatgaca ctgtgatttc acctgagatt ataagttaaa gatttatcgg +ttaaagatgg gcatgcgttc gattagctag ttggcggggt aatggcccac caaggcgacg +atcgataggg gagctgagag gttgatcccc cacacgggca ctgagatacg ggcccgactc +ctacgggagg cagcagtagg gaatattggg caatggatgc aagtctgacc cagccatgcc +gcgtgccgga cgaaggccct cagggttgta aacggctttt attcgggaag aagagcaggg +atgcgtcctt gtgtgacggt accgaatgaa taagcaccgg ctaactccgt g +>OTU_8315 +attgaacgct ggcggcatgc tttacacatg caagtcgaac ggcagcacga gtgcttgcac +ttggtggcga gtggcggacg ggtgagtaat acatcggaac gtatcctaaa gtgggggata +acgcatcgaa agatgtgcta ataccgcata tactctgagg aggaaagtag gggatcgaaa +gaccttatgc ttttggagcg gccgatgtct gattagctag ttggtaaggt aatggcttac +caaggcaacg atcagtagtt ggtctgagag gacgaccagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaattttgga caatgggcgc aagcctgatc +cagcaatgcc gcgtgagtga agaaggcctt cgggttgtaa agctctttca gttgagaaga +aaagattgta actaataatt gcgatccann acngnatcaa canannannc accnnctaac +tacgtg +>OTU_10522 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgacgagg agcttgctcc +tctgatcagt ggcgaacggg tgagtaacac gtgagtaacc tgccccagac tctgggataa +cagttggaaa cagctgctaa taccggatac gagacggaga ggcatctcta ccgtctggaa +agtttttcgg tctgggatgg actcgcggcc tatcagcttg ttggtgaggt aatggctcac +caaggcgacg acgggtagcc ggcctgagag ggcgaccggc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgca caatgggcgc aagcctgatg +cagcgacgcc gcgtgaggga tgacggcctt cgggttgtaa accgctttcg acagggaaga +aaatgacggt acctgtagaa gaagccccgg ccaactacgt g +>OTU_11040 +attgaacgct ggcggcatgc ctaacacatg caagtcgaac ggcagcgcgg gtagcaatac +ctggcggcga gtggcggacg ggtgagtaat gcatcgggat ctacccagac gtgggggata +acgtagggaa acttacgcta ataccgcata cgtcctacgg gagaaagcgg gggctcgcaa +gacctcgcgc ggttggacga accgatgtgc gattagctag ttggtggggt aatggcccac +caaggcgacg atcgctagct ggtctgagag gatgatcagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgga caatgggcgc aagcctgatc +cagcaatgcc gcgtgtgtga agaaggcctt cgggttgtaa agcactttta tcaggagcga +aatgccattg gttaataccc ggtggagctg acggtacctg aggaataagc accggctaac +ttcgtg +>OTU_7263 +aatgaacgct ggcggcgtgc ttaacacatg caagtcgtac gcgaaaggcg ctttcgggtg +ctgagtagag tggcgcacgg gtgagtaacg cgtgggtaat ctacccttgg atcttggata +acacatcgaa aggtgtgcta atacgggatg aagtctgcgg agatgcgttt ttgcagatga +aaggccgcgc aagcggttgt ccgaggatga gcctgcgtcc cattagctag ttggcggggt +aaaggcccac caaggctgag atgggtagct ggtctgagag gatgatcagc cacactggaa +ctggaacacg gtccagactc ctacgggagg cagcagtgag gaattttgcg caatggggga +aaccctgacg cagcaacgcc gcgtgagtga tgaaggcctt cgggtcgtaa agctctgtcg +agtgggaaga aaccgttcag attaataacc tgaaccttga cggtaccact aaaggaagca +ccggctaact ccgtg +>OTU_13379 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgagc gcatgacgag gagcttgctc +ctctgattga gcggcggacg ggtgagtaac acgtgggcaa cctgccctgt agacggggat +aacttcggga aaccggagct aataccggat aatcctcttc cccacatggg gaagagttga +aaggcgcttt tgcgtcacta caggatgggc ccgcggtgca ttagctagtt ggtggggtaa +cggcctacca aggcgacgat gcatagccga cctgagaggg tgatcggcca cattgggact +gagacacggc ccaaactcct acgggaggca gcagtaggga atcttccaca atggacgaaa +gtctgatgga gcaacgccgc gtgagtgatg aaggttttcg gatcgtaaaa ctctgttgta +agggaagaac cagtacgtca ggcaatggac gtaccttgac ggtaccttat tagaaagcca +cggctaacta cgtg +>OTU_1418 +aatgaacgct ggcggcgtgg attaggcatg caagtcgaac gggcattagc aatagtgtca +gtggcgacct ggtcagtaca aattgggtta cgtgcccgga agtgggggat aacgccgtga +aaacggcgct aataccgcat gtggacgaaa gtctaaagca gcagtgcgct tccggatcgg +cccaatcctc attagcttgt tggcggtgta aaagaccacc aaggcatcga tgagtaggcg +acgtgagagc gcgaccgccg acacgaggac tgagatacgg cctcgactcc tacggggggc +agcagtctag aagcttcgtc aatgggcgaa agcctgaacg agcgacgccg cgtgtgggat +gacgcccttt ggggtgtaaa ccactttcga ctgggaagaa ggtccggatg gtgaattcgg +atttgacggt accagtggaa gaagcaccgg ctaactccgt g +>OTU_556 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgagc gaagcggctg aattgattct +tcggatgatt ttcagttgac tgagcggcgg acgggtgagt aacgcgtggg tgacctgccc +cataccgggg gataacagct ggaaacggct gctaataccg cataagcgca cagagctgca +tggctcggtg tgaaaaactc cggtggtatg ggatgggccc gcgtctgatt aggcagttgg +cggggtaacg gcccaccaaa ccgacgatca gtagccggcc tgagagggcg accggccaca +ttgggactga gacacggccc aaactcctac gggaggcagc agtggggaat attgcacaat +gggggaaacc ctgatgcagc gacgccgcgt gagcgaagaa gtatttcggt atgtaaagct +ctatcagcag ggaagataat gacggtacct gactaagaag ccccggctaa ctacgtg +>OTU_6869 +gatgaacgct ggcggcgtgg ataaggcatg caagtcaagg ggcccgcaag ggcaccggca +gacgaggtag taataagtag gtaccaaccc caaagtcagg gatacctcat cgaaagatga +gttaatactt gatggtctct tcggagtaaa gatttatcgc tttgggatgg gcctgctcgg +tatcagctag ttggtaaggt aacggcttac caaggctatg acacctaggg gacctgagag +ggtgaccccc accgatggaa ctgagacacg gtccatacac ctacgggtgg ccgcagtcga +gaatcttccg caatgggcga aagcctgacg gagcgacgcc gcgtgattga tgaagctctt +cggagcgtaa aaatcttttg ccagggaaaa agtatattga ttgtacttgg cgaataagag +gttgctaaac tcgtg +>OTU_10171 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagatatta gtaatagtat +cttagcggcg gacgggtgag taacgcgtgg gcaacctacc ttcaactggg ggataacaca +gggaaacttg tgctaatacc gcataacatc gctaagtgac atcacttaat gatcaaagga +gtaatccggt ggaagatggg cccgcgtccg attagctagt tggtgatgta acggaccacc +aaggcgacga tcggtagccg aactgagagg ttgatcggcc acattgggac tgagacacgg +cccagactcc tacgggaggc agcagtgggg aatattgcgc aatggaggga actctgacgc +agcaacgccg cgtgaaggat gaaggctttc gggttgtaaa cttctttgat gagggacgaa +acaaatgacg gtacctcaaa aacaagccac ggctaactac gtg +>OTU_2830 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gatgaagccc tttcgggggt +ggattagtgg cgaacgggtg agtaacacgt gagtaacctg cccttcactt ctggataact +ctcggaaacg ggggctaata caggatatga ctcaagcctg catgggtttg ggtggaaaga +ttttttggtg ggggatgggc tcgcggccta tcagcttgat ggtggggtga tggcctacca +tggcgacgac gggtagccgg cctgagaggg cgatcggcca cactgggact gagacacggc +ccagactcct gcgggaggca gcagtgggga atattgcaca atgggcgaaa gcctgatgca +gcgacgccgc gtgagggatg aaggccttcg ggttgtaaac ctctttcgtc agggaagaag +cctttcgggg tgacggtacc tggagaagaa gcaccggcta actacgtg +>OTU_4232 +gattaacgct agcggcaggc ctaatacatg caagtcgagg ggcagcaggg tgtagcaata +catcgctggc gaccggcgca cgggtgcgta acacgtatgc aacctacctt taactgggga +atagccctcc gaaaggagga ttaacaccgc ataacatcac gagacggcat cgccttgtga +tcaaacctcc gggggttaaa gatgggcatg cgtccgatta gctagttggc ggggtaacgg +cccaccaagg cgacgatcgg tagggggtct gagaggatga tcccccacac tggtactgag +acacggacca gactcctacg ggaggcagca gtaaggaata ttggacaatg gtcgcaagac +tgatccagcc atgccgcgtg caggatgaac gatctatgat ctgtaaactg cttttgttcg +ggaataaacc ccttcacgtg tggagggctg aatgtaccga aagaataagg gtcggctaac +ttcgtg +>OTU_12831 +aatgaacgtt ggcggcgtgg attaggcatg caagtcgagc gagaaccgta gcaatacggg +gacagcggcg aaagggagag gaccacgtgg atacgtaccc tcgggttcag gatagccatg +ggaaactatg ggtaatactg aatgacatct ccggatcaaa ggtgagattc cgcccgggga +gcggtccgcg tcctattagc tagttggtga ggtaacggct caccaaggcg aagatgggta +tgggatgtga gagcatgatc ccactcactg ggactgagac actgcccaga cacctacggg +tggctgcagt cgagaatctt cggcaatggg ggcaaccctg accgagcgac gccgcgtgcg +agatgaaggc cttcgggttg taaatcgctg tcagagggga ggaaatgtcg gtgggttctc +ccatcgattt gacctatcct cagaggaagg acgggctaag ttcgtg +>OTU_613 +aatgaacgct ggcggcgtgc ctaacacatg caagtcgaat gtgccgcaag gtgcatggca +gacgggtgag taacgcgtgg gcaatctacc ttctcgtggg gaataacgct ccgaaaggag +tggtaatacc gcataagacc gatggctggg atgctgtcgg tgaaacctgg ggaccgcaag +gcctggggcg agaagaggag cctgcgtctg attagctagt tggtggggta atggcctacc +aaggcatcga tcagtagccg gcctgagagg gtgatcggcc acactggaac tgagacacgg +tccagactcc tacgggaggc agcagtgggg aattttgcgc aatgggcgaa agcctgacgc +agcaacgccg cgtgggtgat gaaggtcttc ggatcgtaaa accctgtcgt tggggacgaa +ggtagggcgg ttaatagccg ttttgcttga cggtacccgg agaggaagcc ccggctaact +ctgtg +>OTU_3625 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtaaggccc ttcggggtac +acgagtggcg aacgggtgag taacgcgtga gtaacctgcc cttgactctg ggataacaga +tagaaatgtc tgctaatacc ggatactcag cctcgcaggc atctgtgagg ctggaaagct +ccggcggtca aggatggact cgcgtcctat cagcttgttg gtggggtaat ggcctaccaa +ggcgacgacg ggtagccggc ctgagagggc gaccggccac attgggactg agatacggcc +caaactccta cgggaggcag cagtggggaa tattgcacaa tgggcgaaag cctgatgcag +caacgccgcg tgcgggatga cggccttcgg gttgtaaacc gctttcagca gggacgaagc +gcaagtgacg gtacctgcag aagaagcacc ggctaactac gtg +>OTU_3605 +gacgaacgct ggcggcgtgc ctaatgcatg caagtcgcac gcgccgcctt cgggcggtga +gtggcgcacg gctgaggatc acgtgggaac atgcctcgtg gtgggggaca acagcgcgaa +agcgctgcta atcccgcata cgctcgcgca agcgaggaaa gcggtaacgc gccgcgagag +tggcccgcgg cccatcaggt cgtaggtggg gtaacggcct acctagccga tgacgggtag +ctggtctgtg aggacagaca gccagactgg gactgagaca cggcccagac tcctacggga +ggcagcagca aggaattttc gtcaatgggc gcaagcctga acgagcaacg ccgcgtggag +gatgacggcc ttcgggttgt aaactccttt tgggggggac gataatgacg gtaccccttg +aataaggctc ggctaactct gtg +>OTU_11148 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgacgcgc cttcgggcgc +tgatcagtgg cgaacgggtg agtaacacgt gggcaacctg cccctagctc tgggataacc +cctcgaaaga ggagctaata ccggatatca ccgctccaga catctggtgc ggttgaaagt +ttttcggcta gggatgggcc cgcggcctat cagcttgttg gtggggtaac ggcccaccaa +ggcgacgacg ggtagccggc ctgagagggc gaccggccac actgggactg agacacggcc +cagactccta cgggaggcag cagtggggaa tattgcgcaa tgggcgaaag cctgacgcag +caacgccgcg tgagggacga cggcccttgg gttgtaaacc tctttcagca gggacgaaaa +tgactgtacc tgcagaagaa gcgccggcta actacgtg +>OTU_656 +gatgaacgct ggcggcgtgc ctaacacatg taagtcgaac gtgagagact agcaatagtc +ttgaaagtgg cgaacgggtg agtaacacgt aggaacctgc cctggagtgg gggataacca +ctggaaacgg tggctaatac cgcatacgcc tgtgaagatg ggagtctttg cagggaaaga +gcgattgctc caggaggggt ctgcgtccga ttagctagat ggtggggtaa aggcctacca +tggcgatgat cggtagctgg tctgagagga tgatcagcca cacgggaact gagacacggt +cccgactcct acggggggca gcagtgagga atattgcaca atgggggaaa ccctgatgca +gcaacgccgc gtggaggatt gacggtcttt ggattgtaaa ctccttttct gtgggacgag +cgaggacggt accacaggaa tcagtcacgg ctaactacgt g +>OTU_4382 +attgaacgct ggcggaatgc tttacacatg caagtcgagc ggcagcgcgg gggcaaccct +ggcggcgagc ggcgaacggg tgagtaacat atcggaacgt accctgtcgt gggggataac +acatcgaaag gtgtgctaat accgcatacg acctgagggt gaaagcgggg gatcgcaaga +cctcgcgcga caggagcggc cgatatcgga ttagctagtt ggtgaggtaa aggctcacca +aggcgacgat ccgtagcggg tctgagagga cgacccgcca cactggaact gagacacggt +ccagactcct acgggaggca gcagtgggga attttggaca atgggggcaa ccctgatcca +gccattccgc gtgagtgaag aaggccttcg ggttgtaaag ctctttcagc aggaacgaaa +cggtggcccc taatacgggc tactaatgac ggtacctgaa gaagaagcac cggctaacta +cgtg +>OTU_3834 +gatgaacgct agcggcaggc ctaatacatg caagtcgaac ggtaaggccc tttcgggggt +acacgagtgg cggacgggtg cgtaacgcgt atgcaacata ccttccagcg ggggatatgc +cagggaaact tggtgcaata ccccatggta tcattgtttc acatgggacg atgattaaaa +ctccggtgct gggagattgg catgcgtgac attagctagt tggcggggta acggcccacc +aaggcgacga tgtctagctg gtctgagagg atgatcagcc acactgggac tgagacacgg +cccagactcc tacgggaggc agcagtaggg aatattggac aatgggggga accctgatcc +agccatgccg cgtgagggaa gaaggtcctc tggattgtaa acctcttttg gcgggggaca +aacctgtgct acacgcacag ctgagggtac ccgcagaata agcaccggct aactccgtg +>OTU_13127 +gacgaacgct ggcggcatgc ctaacacatg caagtcgaac ggagaatagt attaagttta +cttgatacta aacttagtgg cggacgggtg agtaacgcgt ggataacctg cctgttagac +cgggataact tcgggaaacc gtagctaata ccggatacag actatatact gcatagtaaa +tagttgaaaa gaatattgct aacagatggg tccgcgtccc attagctagt tggtggggta +acggcctacc aaggcagcga tgggtagccg gcctgagagg gtggacggcc acactgggac +tgagacacgg cccagactcc tacgggaggc agcagtgggg aatattccgc aatgggggga +accctgacgg agcaatgccg cgtgagggac gaatgccttc gggttgtaaa cctttgttct +atgggaagat aatgacggta ccataggagt aagccccggc taactacgtg +>OTU_4528 +gatgaacgct agcgggaggc ctaatacatg caagtcgaac ggtaaggtcc ttcgggatac +acgagtggca aacgggtgcg taacgcgtac ggaacatgcc tctatcagag agatagccct +gggaaactgg gtataatacc tcatagtatt gtattgccgc atggtattta caattaaagc +tccggcggat agagattgtc gtgcgtccca ttagctagtt ggtaaggtaa cggcttacca +aggcgacgat gggtaactgg tttgagagga tgatcagtca cactggaact gagacacggt +ccagactcct acgggaggca gcagtaggga atattggaca atggacgcaa gtctgatcca +gccatcccgc gtgcaggatt aaggccctct gggttgtaaa ctgcttttat tagagaagaa +aacctcagat ttatctgaac ttgacggtat ctaatgaata agcaccggct aactccgtg +>OTU_4485 +aacgaacgct ggcggcatgc ttaacacatg caagttgtgc gagaaccaag gggcttgctc +tttggggaaa gcagcgcacg ggtgagtaac gcgtggataa cgtgccctag ggttggggat +aacccgccga aaggtggact aataccgaat gtgttccaat aaggtgcgcc tatttggaag +aaagcggggc aacccgcgcc caaggatcgg tccgcgttcc atcagctagt tggtgaggta +atggctcacc aaggctacga cggatagctg gtctgagagg atgatcagcc acactgggac +tgagatacgg cccagactcc tacgggaggc agcagtgggg aatattggtc aatgggcgaa +agcctgaacc agcaatgccg cgtgagtgat gaaggcctta gggttgtaaa gctctgtcag +tgggaacgaa taagtcgatt aatacccgat gatgacggta cccacaaagg aagcaccggc +taactctgtg +>OTU_12265 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgagc gagcggaact aacagattta +cttcggtaat gacgttagga aagcgagcgg cggatgggtg agtaacacgt ggggaacctg +ccccatagtc tgggatacca cttggaaaca ggtgctaata ccggataaga aagcagatcg +catgatcagc ttttaaaagg cggcgtaagc tgtcgctatg ggatggcccc gcggtgcatt +agctagttgg taaggtaaag gcttaccaag gcgatgatgc atagccgagt tgagagactg +atcggccaca ttgggactga gacacggccc aaactcctac gggaggcagc agtagggaat +cttccacaat ggacgcaagt ctgatggagc aacgccgcgt gagtgaagaa ggttttcgga +tcgtaaagct ctgttgttgg tgaagaagga tagaggtagt aactggcctt tatttnacng +naatcaacna gnanntcacn nctaactang tg +>OTU_11820 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagataaga agagtacttg +tacaattttt atcttagcgg cggacgggtg agtaacacgt gagtaacctg cctttcactg +gggaataaca tcgagaaatc ggtgctaata ccgcataatg tcaagacatc acctggtgac +ttgaccaaag gagaaatccg gtaaaagatg gactcgcgtc cgattaggta gttggtgagg +taatggccca ccaagcctac gatcggtagc cgaactgaga ggttgatcgg ccacattggg +actgagacac ggcccagact cctacgggag gcagcagtgg ggaatattgg gcaatgggcg +aaagcctgac ccagcaacgc cgcgtgaagg aagaaggtct tcggattgta aacttctttg +acgagggacg aaaaaaatga cggtacctcg aaaacaagcc acggctaact acgtg +>OTU_4093 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgatagca atatcacagt +ggcgcacggg tgaggaacac gtagctcatc tgccccaaag tgtgggataa cggtccgaaa +ggattgctaa taccgcataa gctcccggac tgtagaggtc tgagagaaaa ggcgcaagtc +gctttgggag gaggctgcgg cccatcaggt agttggtgtg gtaacggcgc accaagccaa +cgacgggtag gggacctgag agggtgaccc cccacactgg gactgagaca cggcccagac +tcctacggga ggcagcagtg aggaatattg cccaatggac gcaagtctga ggcagcgacg +ccgcgtgggt gaagaaggcc ttcgggtcgt aaagcccttt tctgtgtgac gagaacggac +ggtagcacag gaaaaagtct cggctaacta cgtg +>OTU_8360 +gatgaacgct agcggcaggc ttaacacatg caagtcgagg ggtaaatagt tttcggatta +ttgagaccgg cgcacgggtg cgtaacgcgt atgcaatcta ccttttacag agggatagcc +cagagaaatt tggattaata cctcatagta tagttgaatg gcatcattta attattaaag +ttccaacggt aaaagatgag catgcgtccc attagttagt tggtaaggta acggcttacc +aagacaatga tgggtagggg tcctgagagg gagatccccc acactggtac tgagacacgg +accagactcc tacgggaggc agcagtgagg aatattggac aatgggcgca agcctgatcc +agccatgccg cgtgcaggaa gaagcatcta tggtgtgtaa actgcttttg tacgggaaga +aacatcacta cgtgtagtga cttgacggta ccgtaagaat aaggatcggc taactccgtg +>OTU_15123 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gaggattttt atttcggtaa +aaatccgagt ggcaaacggg tgagtaacgc gtaggcaacc tgcctttctg atggggacaa +cagttcgaaa ggactgctaa taccgaatga cgtatatttc tcgcatgaga gacataccaa +agatggcctc tgaatatgct atcacagaaa gatgggcctg cgtctgatta gctggttggt +ggggtaacgg cctaccaagg cgacgatcag tagccggtct gagaggatga acggccacat +tgggactgag acacggccca gactcctacg ggaggcagca gtggggaatc ttccacaatg +gacgaaagtc tgatggagca acgccgcgtg agtgaagaag gttttcgaat cgtaaagctc +tgttgtcagg gacgaatgtt gagactgaga atattggttt caaatgacgg tacctgacga +ggaagccacg gctaactacg tg +>OTU_11928 +aatgaacgct ggcggcgtgc ttaacacatg caagtcgcac gagaacgctt ctgcttgcag +gggctagtaa agtggcgcac gggtgagtaa cgcgtgggta atctaccccc ggatctggga +taaccctccg aaaggggtgc taataccgga tgaagtcatt gagactgcgg ttttgatgat +gaaaggtggc ctctccatgg aagctactgt ttggggatga gcccgcgtac cattagctag +ttggtggggt aacggcctac caaggcagcg atggttagct ggtctgagag gatgatcagc +cacactggaa ctgacacacg gtccagactc ctacgggagg cagcagtgag gaattttgcg +caatgggggg aaccctgacg cagcaacgcc gcgtgagtga agaaggcctt cgggtcgtaa +agctctgtcg agtgggaaga acattttcat ggtgaacatc catggggatt gacggtacca +cagaaggaag caccggctaa ctccgtg +>OTU_11334 +agcgaacgct ggcggcatgc ttaacacatg caagtcgcac ggtcgggggc aacctcggca +gtggcggacg ggtgagtaac gcgtaggcat ctatccttgg atgggggaca accgtgggaa +actacggcta ataccgcatg aagcctgagg gctaaagctc gcgagagcgt ctggggcgga +gcctgcgtcc gattagctag ttggtggggt aaaggcctac caaggcgatg atcggtagct +ggtctgagag gatgatcagc cacactggga ctgagacacg gcccagactc ctacgggagg +cagcagtggg gaatattgga caatgggcgc aagcctgatc cagcaatgcc gcgtgggtga +agaaggtctt cggattgtaa agccctttcg acggggacga tgatgacggt acccgtagaa +gaagccccgg ctaacttcgt g +>OTU_4511 +agcgaacgtt agcggcgcgc ctaacacatg caagtcgcac gagaaagggc ttcggccccg +gtaaagtggc gcacgggtga gtaacacgtg ggcaacctgc ccaaccctgg gggataacct +gccgaaaggc gggctaatac cgcgtacgag ggctctactt cggtagggtt ctgaaagcag +gcctctgtat acaagcttgc ggggttggat gggcccgcgc tccatcagct agttggtgag +gtaagagctc accaaggcta cgacggatag ctggtctgag aggatgatca gccacactgg +aactgagaca cggtccagac tcctacggga ggcagcagtg gggaatcttg cgcaatgggc +gaaagcctga cgcagcgacg ccgcgtgggt gacgaaggcc ttcgggttgt aaagccctgt +ggggcgagac gaacagccag ggaacgaaca gctccttggt ttgacggtat cgccttagca +agcaccggct aactctgtg +>OTU_3265 +gatgaacgct ggcggcgtgc ctaatacatg caagtcgaac gcgataagca attatcgagt +ggcgaccggg tgagtaacac gtagctgatc taccttctac agggggataa cgtcccgaaa +gggatgctaa taccgcgtaa gctcggagga cttagaacct tccgaggaaa gccttagggc +ggtagaagag gaggctgcgt tccatcagct agttggtgag gtaaaggctc accaaggcga +cgacggatcg gggacctgag agggtgaccc cccacactgg tactgacaca cggaccagac +tcctacggga ggcagcagta aggaatattg cgcaatggac gaaagtctga cgcagcaacg +ccgcgtgcgg gatgaagggc ttcggctcgt aaaccgcttt tatcagggaa gagtaaggac +ggtacctgat gaataagtct cggctaacta cgtg +>OTU_2991 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggatgccctt tttgcagcaa +tgcttggggg gtgttagtgg cgaacgggtg agtaacacgt gaggaacctg ccttggagac +ggggataact ttcggaaacg ggggctaata ctcgatgtct tcgcttggtc gcatggctgg +gtgaagaaat gcttttgtgc tctgggaggg tctcgcggcc tatcagcttg ttggtgaggt +aatggctcac caaggcgtcg acgggtagct ggtctgagag gatgatcagc cacactggga +ctgagacacg gcccagactc ctacgggagg cagcagtggg gaatcttgcg caatgggcgg +aagcctgacg cagcaacgcc gcgtggggga cgaaggcttt cgggttgtaa acccctttca +gtaggaacga ttgtgacggt acctacagaa gaagcaccgg ctaactacgt g +>OTU_522 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac gtgagggaat agcaatattc +ttgaaagtgg cgcacgggtg agtaatacgt aggtaacctg ccctggagtg ggggataaca +gctagaaatg gctgctaata ccgcatgagg ccgagacact gggaagtgtt ttggcgaaaa +ctctggtgct tcaggagggg cctgcggccg attagctagt tggcggggta atggcccacc +aaggcagtga tcggtagctg gtctgagagg acgatcagcc acacgggaac tgagacacgg +tcccgactcc tacggggggc agcagtgagg aatattgggc aatgggcgga agcctgaccc +agcaacgccg cgtggaggaa gacggccttc gggttgtaaa ctccttttac gggggaagag +gaaggacggt accccgagaa taagtcacgg ctaactacgt g +>OTU_11832 +attgaacgct ggcggcatgc tttacacatg caagtcgaac ggcagcacgg gtgcttgcac +ctggtggcga gtggcggacg ggtgagtaat acatcggaac gtatcctaaa gtgggggata +acgcatcgaa agatgtgcta ataccgcata cactctgagg aggaaagtag gggatcgaaa +gaccttatgc ttttggagcg gccgatgtct gattagctag ttggtaaggt aatggcttac +caaggcaacg atcagtagtt ggtctgagag gacgaccagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaattttgga caatgggcgc aagcctgatc +cagcaatgcc gcgtgagtga agaaggcctt cgggttgtaa agctctttca gcagggacga +aactgacggt acctgcagaa gaagcaccgg ctaactacgt g +>OTU_6358 +gatgaacgct ggcggcgtgc ttaacacatt caagtcgaac ggagaacggg gagcttgctc +cccgggatca gtggcggacg ggtgagtaac gcgtgagcaa cctgcctgtg tgtgggggat +aacacccgga aacgggtgct aataccgcat aacgcaacgg agccgcatga ctttgttgcc +aaagatatat tgcgcacaga tgggctcgcg tctgattaga tagttggtga ggtaacggct +caccaagtcg acgatcagta gccggactga gaggttgaac ggccacattg gaactgagat +acggtccaga ctcctacggg aggcagcagt ggggaatatt gggcaatggg cgaaagcctg +acccagcgac gccgcgtgag ggaagaaggt cttcggattg taaaccttag tcaacaggga +agaagaaagt gacggtacct gtggaggaag ccacggctaa ctacgtg +>OTU_3611 +aatgaacgct ggcggcgtgc ctaatacatg caagtcgagc 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ataaggatcg gctaactccg +tg +>OTU_7471 +gatgaacgct agcggcaggc ttaatacatg caagtcgaac gagaaaggat tcttcggaat +ctgagtagag tggcgaaagg gtgagtaaca cgtatgcaat ctgccccgtt ctggaggata +cctcttggaa acgagaaata atactccgta taattccttt gacgcatgtc agaggaatga +aagctccggc ggaacgggag gagcatgggt cctattagct agttggtgag gtaacggctc +accaaggcca tgatgggtag gggttctgag aggaaggtcc cccacactga cactgagata +cgggtcagac tcctacggga ggcagcagta aggaatattg gtcaatggac gcaagtctga +accagccatg ccgtgtgcag gacgaagctt ttaggagtgt aaactgcttt tttatgggaa +caaagagctc ctgcgggaga agttgagagt accataagaa taagtaccgg ctaactatgt +g +>OTU_14124 +gacgaacgct ggcggcgcgc ctaacacatg caagtcgaac ggagttattc tgaatgaagt +tttcggatgg atttcggact aacttagtgg cgaacgggtg agtaacgcgt gagtaacctg +ccctggagtg ggggacaaca gttggaaacg actgctaata ccgcataagc ccacggtgcc +gcatggcaca gcgggaaaag gatttattcg cttcaggatg gactcgcgtc caattagcta +gttggtgagg taacggccca ccaaggcgac gattggtagc cggactgaga ggttgaacgg +ccacattggg actgagacac ggcccagact cctacgggag gcagcagtgg gggatattgc 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tgtaggtaaa ggctcaccaa +gcctatgacg ggtagtcggt ctgagaggat gtccggccgc aatgggactg agacacggcc +catactccta cgggaggcag cagtggggaa tcttgcacaa tgggcgaaag cctgatgcag +caattctgcg tgaaggatga agcattatgg tgtgtaaact tcttttctgg gggacgaaga +atgacggtac ctcaggaata agggacggct aactacgtg +>OTU_11414 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggacccttcg gggttagtgg +cggacgggtg agtaacgcgt gaggatctgc ccttaggagg ggaacaacag ttggaaacga +ctgctaatgc cccatatgcc gagaggtgaa aagttatatc gcctagggat gaactcgcgt +ctgattagct agttggtggg gtaaaggctc accaaggcga cgatcagtag ctggtctaag +aggatgatca gccacactgg gactgagaca cggcccagac tcctacggga ggcagcagtg +gggaattttc cgcaatgggc gaaagcctga cggagcaacg ccgcgtgagg gacgaaggcc +ttagggttgt aaacctcttt tctctgggaa gaagaactga cggtaccaga ggaataagcc +tcggctaact ccgtg +>OTU_2232 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgaagcca agcttgcttg +gtggatcagt ggcgaacggg tgagtaacac gtgagtaacc tgccccagac tctgggataa +gcgctggaaa cggcgtctaa taccggatac gagacgagac cgcatggtca ttgtctggaa +agaatttcgg tctgggatgg actcgcggcc tatcagcttg ttggtgaggt aatggctcac +caaggcgtcg acgggtagcc ggcctgagag ggtgaccggc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgca caatgggcgc aagcctgatg +cagcaacgcc gcgtgaggga cgaaggcctt cgggttgtaa acctctttta gcagggaaga +agcgaaagtg acggtacctg cagaaaaagc gccggctaac tacgtg +>OTU_13504 +gatgaacgct ggcggcgtgc ctaatacatg caagtcgaac gaatcttggt gaatgaattg +gagtgcttgc acaaagaggc atttacaatg agatgagtgg cggacgggtg agtaacacgt +gggtaacctg ccctgaagtg ggggataaca tttggaaaca gatgctaata ccgcataaca +atgagagtca catgactttt atttgaaaga tggagcaatc tatcacttca ggatggacct +gcggcgtatt agctagttgg taaggtaaag gcttaccaag gcgatgatac gtagccgact +tgagagagtg atcggccaca ttgggactga gacacggccc aaactcctac gggaggcagc +agtagggaat cttccacaat ggacgaaagt ctgatggagc aacgccgcgt gagtgaagaa +gggtttcggc tcgtaaaact ctgttattgg agaagaagga taaggtaagt aactgtactt +tatttgacgg tacccaacca gaaagtcacg gctaactacg tg +>OTU_173 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgaac gtgaaggggt acttgtatcc +ctgaaagtgg cgaacgggtg agtaacacgt aggtgaccta cctcaaagaa ggggataact +actggaaacg gtggctaata ccctatggtt ctgacgactg tggaggttgt cagataaaga +ctccggtgct ttgagagggg cctgcgtccg attaggtagt tggtggggta aaggcctacc +aagccgatga tcggtagctg gtctgagagg acgatcagcc acactggaac tgagacacgg +tccagactcc tacggggggc agcagtgagg aatattgcac aatgggggca accctgatgc +agcaacgccg cgtggaggat gaaggccttc gggtcgtaaa ctccttttct gggggaagag +gaaggacggt accccaggaa taagtcacgg ctaactacgt g +>OTU_11006 +gataaacgct ggcggcgtgc ttaacacatg caagtcgaac gagacatggt ataacgaggt +gcttgcacca aggagtgcca tgtcgagtgg cggacgggtg agtaacgcgt gagtaacctg +ccgtataccg ggggacaaca gagggaaact tctgctaata ccgcataagc gcacagccct +gcatggggca gtgtgaaaaa ctccggtggt atacgatgga ctcgcgtctg attagccagt +tggcggggta aaggcccacc aaagcgacga tcagtagccg gcctgagagg gtgaacggcc +acattgggac tgagacacgg cccagactcc tacgggaggc agcagtgggg aatattgcac +aatgggggaa accctgatgc agcgacgccg cgtgagtgaa gaagtatttc ggtatgtaaa +gctctatcag cagggaagaa aagaatgacg gtacctgaat aagaagcccc ggctaactac +gtg +>OTU_9035 +gatgaacgct agcggcaggc ctaatacatg caagtcgaac ggcaagattt ggtagcaata +ctgaatccta gagtggcgca cgggtgagta acgcgtacat gacataccta taagcgaggg +atagcattgg gaaactggta gtaacccctc atgtgattat ttgtaataaa ggtaaataat +taaaactacg gtgcttatag attggtgtgc gtctgattag ctagttggcg aggtaacggc +tcaccaaggc gacgatcagt agggggcgtg agagcgtgaa cccccacacg ggtactgaga +cacggacccg actcctacgg gaggcagcag taaggaatat tggtcaatgg agggaactct +gaaccagcca tgccgcgtgc aggatgaaag ccctctgggt tgtaaactgc ttttaacagg +gaagaaaatg ctatacgtga tatagtacnn gcngnncctg agnnntnnnc accnnctaac +tccntg +>OTU_8165 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgaac gaaccagtca gattgatttc +ttcggaatga aatcagacac ggttagtggc ggacgggtga gtaacacgtg ggtaatttac +ctcttagaca gggataacac tgggaaactg gtgctaatac ctgataaagt ttatataagg +catcttaaat agatgaaatg gaggcctctc aaagaagctc ccgctaagag atgaacccgc +ggctgattag ctagttggta aggtaatggc ttaccaaggc aacgatcagt agccggcctg +agagggtgat cggccacact gggactgaga cacggcccag actcctacgg gaggcagcag +tggggaatat tgcgcaatgg gggaaaccct gacgcagcaa cgccgcgtga gtgaagaagg +tcttcggatt gtaaagctct gtcaattggg aagaaggctt acaggtaaat agcctgtgag +atgacggtac ctaagaagga agctccggct aactacgtg +>OTU_1707 +attgaacgct ggcggaatgc tttacacatg caagtcgaac ggcagcacgg gggcaaccct +ggtggcgagt ggcgaacggg tgagtaacac atcggaacgt gcccagtcgt gggggataac +gtagcgaaag ctacgctaat accgcatacg aactctggtt gaaagcgggg gactcgcaag +ggcctcgcgc gattggagcg gccgatggca gattaggtag ttggtggggt aaaggctcac +caagccgacg atctgtagct ggtctgagag gacgaccagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaattttgga caatgggcgc aagcctgatc +cagccattcc gcgtgcagga tgaaggccct cgggttgtaa actgcttttg tacggaacga +aacggtctga gttaatacct cgggctaatg acggtaccgt aagaataagc accggctaac +tacgtg +>OTU_4805 +aacgaacgct ggcggcatgc ctaacacatg caagtcgaac gccccgcaag gggagtggcg +aacgggtgag taacgcgtgg gaacctaccc agcagttggg gataaccgcg ggaaactgcg +gctaataccg aatacgtcct tagggagaaa gatttatcgc tgttggaggg gcccgcgtcg +gattagctag ttggtgaggt aacggctcac caaggcgacg atccgtagct ggtctgagag +gatgatcagc cacactggga cttagacacg gcccagactc ctacgggagg cagcagtggg +gaatattgga caatgggggc aaccctgatc cagcaatgcc gcgtgagtga tgaaggcctt +agggttgtaa agctctttta ccggggacga tgatgacggt acccggagaa taagccccgg +ctaacttcgt g +>OTU_7801 +agcgaacgct ggcggcaggc ttaacacatg caagtcgaac gggcacttcg gtgctagtgg +cagacgggtg agtaacacgt gggaacgtac ctttcggttc ggaataattc agggaaactt +ggactaatac cggatacgcc cgagttcttt gactaggact tggggaaaga ttcatcgccg +atagatcggc ccgcgtctga ttagctagtt ggtgaggtaa tggctcacca aggcgacgat +cagtagctgg tctgagagga tgatcagcca cattgggact gagacacggc ccaaactcct +acgggaggca gcagtgggga atattggaca atgggcgcaa gcctgatcca gccatgccgc +gtgagtgatg aaggccttag ggttgtaaag ctcttttgtc cgggaagata atgactgtac +cggaagaata agccccggct aacttcgtg +>OTU_6106 +aacgaacgct ggcggcgtgg attaggcatg caagtcgtgc gcgaaagtgg tagcaatact +gcgagtagag cggcgaactg gtgagtacaa ggtgactaac gtgcccctga gtgggggata +acctgccgaa aggtggacta ataccgcata acttccggag tgctttggcg ttccggagca +aagcagtgat gcgctcaggg atcgggtcac cccccattag ctagttggtg gagtaatagc +ccaccaaggc ttcgatgggt agctggtctg agaggatggt cagccacact gggattgaga +tacggcccag actcctacgg ggggcagcag tctagaggct tcgtcaatgc ccgaaagggt +gaacgagcga cgccgcgtgc gggatgaagg gcttcggctt gtaaaccgct tttgtttggg +aagaatgccc ggatcgtgaa tctgggaggg acggtaccag acgaataagc cccggctaac +tccgtg +>OTU_9681 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtcctgttt ttgaagcgct +tcggcgtgga ggggacgggg cagtggcgca cgggtgagta atgcgcgagg acctgcccgc +aggaggggga cagcagttgg aaacggctgg tgataccccg taggccggga ggtgaaaggg +cggagacgcc cgcctgcgga tggactcgcg tcctatcagc tagttggtga ggcaacggct +caccaaggcg acgacgggta gccggcctga gagggtgtcc ggccacactg gaactgagac +acggtccaga ctcctacggg aggcagcagt ggggaatttt gggcaatggg ggagaccctg +acccagcgac gccgcgtgag ggacgaaggc ccttgggtcg taaacctctt ttgcagggga +agaagaagat gacggtacct tgcgaacaag tcccggctaa ctacgtg +>OTU_4039 +aacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gcgaaaggga cttcggtcct +gagtaaagtg gcgcacgggt gagtaacgcg tagataacct gtccttgtgt tcgggataat +atgccgaaag gtgtactaat accggatact cttgcttttc acaagttatg 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acttcggttt +tgtgattagt ggcgaacggg tgagtaacac gtgagtaacc tgcccttgac tttgggataa +ctaccggaaa cggtggctaa tactgaatat gacctgtccc tgcatggggg tgggtggaaa +gcttttgcgg tcagggatgg gctcgcggcc tatcagcttg ttggtggggt agtggcctac +caaggcgtcg acgggtagcc ggcctgagag ggcgaccggc cacactggga ctgagatacg +gcccagactc ctacgggagg cagcagtggg gaatattgca caatgggcga aagcctgatg +cagcaacgcc gcgtgcggga tgacggcctt cgggttgtaa accgctttca cccatgacga +agagttattg acggtagtgg gagaagaagc accggctaac tacgtg +>OTU_684 +gatgaacgct agcggcaggc ctaatacatg caagtcgagg ggcagcggga gtagcaatac +ttgccggcga ccggcgcacg ggtgcgtaac acgtatacaa tctgccttct actgggggat +agcctttcga aagagagatt aataccccat aataaatgaa atagcattat tttattttga +aagatccgtc ggtagaagat gagtatgcgt ctgattagct agttggtgag gtaatggctc +accaaggcta cgatcagtag gggatctgag aggactaccc cccacactgg tactgagaca +cggaccagac tcctacggga ggcagcagta aggaatattg gacaatggag gcaactctga +tccagccatg ccgcgtgaag gatgaaggcc ctatgggtcg taaacttctt ttgtacgaga +gaaaaccatt tcacgtgtga gatgttgata gtatcgtaag aataaggatc 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tagttggcag ggtaacggcc taccaaggca acgacgggta +gggggtctga gaggacgtcc ccccacactg gaactgaaac acggtccaga cgcctacggg +tggcagcagt gaggaatatt ggtcaatggg cgaaagcccg aaccagcaac gccgcgtgga +ggatgaaggt tttcggactg taaacttctt ttcggggaga cgagaaagga cggtatcccc +ggaataagcc acggcaaact acgtg +>OTU_10641 +aacgaacgct ggcggcaggc ctaacacatg caagtcgaac gccctagcaa tagggagtgg +cagacgggtg agtaacacgt gggaaccttc cctatagtac ggaatagccc agggaaactt +ggagtaatac cgtatacgcc cgtaagggga aagatttatc gctataggat gggcccgcgt +cggattagct agttggtgag gtaacggctc accaaggcga cgatccgtag ctggtttgag +agaacgacca gccacactgg gactgagaca cggcccagac tcctacggga ggcagcagtg +gggaatattg gacaatgggc gcaagcctga tccagccatg ccgcgtgagt gatgaaggcc +ttagggttgt aaagctcttt tagcagggaa gataatgact gtacctgcan nntaanctcc +ggctaacttc gtg +>OTU_236 +attgaacgct ggcggcatgc tttacacatg caagtcgaac ggtaacaggg acttcggtct +gctgacgagt ggcgaacggg tgagtaacat atcggaacgt gcccagtaat gggggatagc +tcggcgaaag ccggattaat accgcatacg ccctgagggg gaaagtgggg gatcttcgga +cctcacgtta 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tatattcccg tgaggggaaa gatttatcgc tgctggatgg gcccgcgtcg +gattagctag ttggtgaggt aacggctcac caaggcgacg atccgtagct ggtttgagag +aatgaccagc cacactggga ctgagacacg gcccagactc ctacgggagg cagcagtggg +gaatcttgga caatgggcgc aagcctgatc cagccatgcc gcgtgagtga cgaaggcctt +agggttgtaa agctcttttg ccggggacga taatgacggt acccggagaa taagtcccgg +ctaacttcgt g +>OTU_13660 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgaac ggtcttttct atggaagctt +gcttccactg agaagatagt ggcgaacggg tgagtaacac gtgggtaacc tgcccataag +agggggataa catccggaaa cgggtgctaa taccgcatag ttttcttgat cgcatgattg +agaaaggaaa gacggccttt gtgctgtcgc ttatggatgg acccgcggcg tattagttag +ttggtgaggt aacggctcac caagacgatg atacgtagcc gacctgagag ggtgatcggc +cacattggga ctgagacacg gcccagactc ctacgggagg cagcagtaag gaatattggg +caatggacgg aagtctgacc cagccatgcc gcgtgcagga agaaggccct atgggttgta +aactgctttt ctgagggaag agataggacg gtacctcagg aataagtctc ggctaactac +gtg +>OTU_9412 +gacgaacgct ggcggcgtgc ttaacacatg caagtctacg agaacgaggt agcaatatct +ttagtaaagt ggcgtacggg 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gcaagcttga ccgagcgacg ccgcgtgtgg +gatgaaggcc ttcgggttgt aaaccactgt cgagggggac gaaattctat ggggtactct +tcatagattg acagatccct ggaggaaggg tgggctaagt tcgtg +>OTU_4933 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgagc gatgaagctc cttcgggagt +ggattagcgg cggacgggtg agtaacacgt gggcaacctg ccttgtagag aggaatagcc +attcgaaagg atgattaata cctcataata ttgtagcttc gcatgaagca acaatcaaag +gagcaatcca ctacaagatg ggcccgcggc gcattagcta gttggtgagg taacggctca +ccaaggcgac gatgcgtagc cgacctgaga gggtgatcgg ccacattggg actgagacac +ggcccagact cctacgggag gcagcagtgg ggaatattgc acaatggggg aaaccctgat +gcagcaacgc cgcgtgagtg atgacggtct tcggattgta aagctctgtc ttcagggacg +ataatgacgg tacctgagga ggaagccacg gctaactacg tg +>OTU_8885 +gatgaacgcc ggcggtgtgc ctaatacatg caagtcgagc gcactggccc aacagaaatg +acgtgcttgc actgatttga cgttggattc ccagtgagcg gcggacgggt gagtaacacg +tgggcaacct gccccaaagc gggggataac atttggaaac aggtgctaat accgcataac +ttggaaaacc acatggtttt ccaataaaag atggtttcgg ctatcacttt gggatgggcc +cgcggtgcat tagctagttg gtaaggtaac ggcttaccaa ggcgatgatg catagccgag +ttgagagact gatcggccac aatggaactg agacacggtc catactccta cgggaggcag +cagtagggaa tcttccacaa tgggcgcaag cctgatggag caacaccgcg tgagtgaaga +agggtttcgg ctcgtaaaac tctgttgttg gagaagaacg tgcgtaagag taactgttta +cgcagtgacg gtatccaacc agaaagtcac ggctaactac gtg +>OTU_4226 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac gtgaggaggt agcaatatct +ctgaaagtgg cgcacgggtg agtaacacgt aggtaacctg ccctgaagcg ggggataaca +gttggaaacg gctgctaata ccgcatgaga ctgataagcc gggaggctta ttggtgaaaa +tcttggtgct tcaggagggg cctgcggccg attagctagt tggtggggta agagcctacc +aaggcgacga tcggtagctg gtctgagagg acgatcagcc acacgggaac tgagacacgg +tcccgactcc tacggggggc agcagtgagg aatattgggc aatgggcgaa agcctgaccc +agcaacgccg cgtggaggaa gacggccttc gggttgtaaa ctccttttac gggggaagag +gaaggacggt accccgagaa taagtcacgg ctaactacgt g +>OTU_1821 +aacgaacgct agcgggatgc ctcaaacatg caagtcgtac gcgaaagtct tcggatgagt +agagtggcgc acgggtgagt aacacgtagc taacataccc tttcgctggg gataactccg +ggaaaccgga gctaataccg aatgatctga tgagatctgc 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gaagtagcaa tacttagtgg +cggacgggtg cgtaacacgt gactaacttg cccaagactg tggaataacg gagggaaact +tccgctaata ccgcatgttg agcttaggtg gcatcaccgg agcttgaaag atttatcggt +cttggatagg gtcgcggcct attagcttgt tggtgaggta atggctcacc aaggcgacga +tgggtagctg gtctgagagg atgatcagcc acactgggac tgagatacgg cccagactcc +tacgggaggc agcagtgagg aatattgcgc aatgggcgaa agcctgacgc agcaacgccg +cgtgaaggat gaaggtgctc tgcattgtaa acttctgtag ggagggaaga aaacccactc +cgtgggcttg acggtacctc caaagtaagc accggctaat tccgtg +>OTU_541 +aatcaacgct ggcggcgtgc ctaacacatg caagtcgaac gcgaaagtgg agcaatccat +gagtagagtg gcaaacgggt gagtaacacg tgggtgacct gccttagagt gggggataac +gtcccgaaag ggacgctaat accgcataac atgctgcctt ttaagaggtg gacatcaaag +ccggggaccg caaggcctgg cgcttaaaga ggggcccgcg cctgattagc tagttggtgg +ggtaatggct caccaaggca acgatcagta tccggcctga gagggcggac ggacacactg +ggactgagac acggcccaga ctcctacggg aggcagcagt ggggaattgt tcgcaatggg +cgcaagcctg acgacgcaac gccgcgtgga ggatgaagat cttcgggttg taaactcctt +tcgatcgaga cgaatggccc ttgggctaac atcctgaggg 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atttattcgg agtaaagatt +tatcgcttcg ggaggggcct gcgtccgatt agctagttgg tgaggtaaat gctcaccaag +gcgacgatcg gtagctggtt tgagaggatg accagtcaca ctgggactga gatacggccc +agactcctac gggaggcagc agtaaggaat cttccacaat gggggcaacc ctgatggagc +aataccgcgt gcaggatgaa gcgtttcggc gtgtaaactg cttttatctg tgatgattat +gacagtagca gaagaataag gatcggctaa ctacgtg +>OTU_4839 +cctgaacgct ggcggcgtgg ctaagacatg caagtcgtac gggtgtagca atacaccagt +ggcgcacggg tgagtaacat atagctaatc taccctggaa tctgggatag ctgtccgaaa +ggacaggtaa taccagatga aataactgtg tcgcatggca cggttctcaa agggcaaccg +ttctgggatg aggctatatt gtatcagcta gttggtaggg taatggccta ccaaggcaat +gacgcatagc cggactgaga ggttggccgg ccacatcgga actgagacac tgtccggact +cctacggggg gctgcagtaa cgaatcttcc acaatgcacg aaagtgtgat ggagcgacgc +cgcgtgtggg acgaagtcct tcgggatgta aaccactgtc aagggaaaga aagatctgat +ctaccctaga ggaagtggcg actaactctg tg +>OTU_11689 +attgaacgct ggcggcatgc ttaacacatg caagtcgaac ggatcgtgtt tcttcggatt +catggttagt ggcgaacggg tgagtaacac gtgagtaacc tgcccttcac tttgggataa 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aggaatcttg +cgcaatgggg gaaaccctga cgcagcgacg ccgcgtgagt gatgaagtcc ttcgggatgt +aaagctctgt cctggaggga agaagtcagt gacggtacct ccagagaaag ccccggctaa +ctacgtg +>OTU_11781 +gatgaacgct ggcggcgcgc ctaacacatg caagtcgaac gattaaagca ccttcgggtg +tgtataaagt ggcgaacggc tgagtaacac gtgggcaacc tgcccctcac accgggacag +cctcgggaaa ccgtggttaa taccggatac tccaaacctt ccacatggtg ggtttgggaa +agctccgacg gtgagggatg ggcccgcggc ctgttagctt gttggtgggg taatggccta +ccaaggcgat gatgggtagc cgggttgaga gaccgaccgg ccagattggg actgagacac +ggcccagact cctacgggag gcagcagtag ggaatcttgc gcaatgggcg aaagcctgac +gcagcaatgc cgcgtgcggg acgaaggccc tagggtcgta aaccgctttc agtagggacg +aaaatgacgg tacctgcaga agaagctccg gccaactacg tg +>OTU_3700 +gatgaacgct agcgataggc ctaacacatg caagtcgagg ggcagcacat gaagtagcaa +tacggatggt ggcgaccggc gcacgggtga gtaacgcgta tgcaatctac ctacaacaag +ggaataactc gttgaaagac ggactaatac cctataaaac aggggtcccg catgggaata +tttgttaaag atttatcggt tgtagatgag catgcgttcc attagcttgt tggtgaggta +acggcccacc aaggcaacga tggatagggg aactgagagg tttatccccc acactggtac +tgagacacgg accagactcc tacgggaggc agcagtgagg aatattggtc aatggaggca +actctgaacc agccacgtcg cgtgaaggaa gacggcccta cgggttgtaa acttcttttg +taagggaata aagtgcagta cgtgtactgt tttgcatgta ccttacgaat aaggatcggc +taactccgtg +>OTU_6318 +aacgaacgct ggcggcatgc ttaacacatg caagtcgaac ggtaacagtc ccgcaaggga +gctgacgagt ggcgcacggg tgagtaacac gtgaataacc tgcccaaagc actgggataa +catatcgaaa gatgtgctaa taccggatga aatatatgac tgcagggttg tatattaaag +aagcaattcg gcaatggagg ggttcgcgtc ccattaggta gttggtaagg taacggctta +ccaagccaaa gatgggtagc tggtttgaga gaatgatcag ccacactgga actgagaaac +ggtccagact cctacgggag gcagcagtga gggatattgc acaatggagg gaactctgat +gcagcaatgc cgcgtgagtg aaggaggccc tatgggttgt aaagctctgt ggatggggaa +aataatgatg gtacccattt agaaagcacc ggctaactac gtg +>OTU_2148 +attgaacgct ggcggcatgc cttacacatg caagtcgaac ggattcaagg ggcttgctcc +ttgagttagt ggcgaacggg tgagtaaagc atcggaacgt acccagtcgt gggggataac +gtagcgaaag ttacgctaat accgcatacg tcctgaggga gaaagcgggg gactcgcaag +agcctcgcgc 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tcggggaaga +agcactgacg gtacctgagg aataaggacc ggctaactac gtg +>OTU_8245 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggagatatga tttcggttat +atcttagtgg cgaacgggtg agtaacgcgt gagcaacctg accttcagag ggggataaca +tttggaaaca gatgctaata ccgcataaga ccacgccgtg gcatcacgga gaggtcaaag +gagcaatccg ctgagggagg ggctcgcgtc ccattagata gatggcgggg taacggccca +ccatgtcaac gatgggtagc cgagctgaga ggctgatcgg ccacactgga actgagacac +ggtccagact cctacgggag gcagcagtgg ggaatattgg gcaatgggcg caagcctgac +ccagcaacgc cgcgtgaggg aagaaggctt tcgggttgta aacctctgtc cttggtgacg +aaaaaaatga cggtagccaa ggaggaagcc ccggctaact acgtg +>OTU_10847 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagaaacaa aagagcagct +tgctgcgatt tgtttcttag cggcggacgg gtgagtaacg cgtgggtaat ctgcctcaaa +cagggggata acacagggaa acttgtgcta ataccgcata agaccccacc atggcatcat +ggagaggtca aaggaagaaa ttccggtttg agatgagccc gcgtctgatt agctagttgg +tgaggtaacg gctcaccaag gcgacgatca gtagccgaac tgagaggttg atcggccaca +ttgggactga gacacggccc agactcctac gggaggcagc agtggggaat 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acggatgggt aataccggat gtcgtacctg gagggcctcc ttcgggtacg +aaagttcagg cgctccggga ggggcccatg tagtattagc tagttggtga ggtaacggct +caccaaggcc aagatgctta gcaggtgtga gagcacgacc tgcgccactg gcactgggac +actggccaga ctcctacggg aggctgcagt cgaggatctt cggcaatggg cgcaagcctg +accgagcgac gccgcgtgtg cgatgaaggc cttcgggttg taaagcactg tcggggggga +gaaaagccgc aaggcttgat cgacccccgg aggaagcacg ggctaagttc gtg +>OTU_9512 +gatgaacgct agcggcaggc ttaacacatg caagttgcgg ggcagcagta cttcggtagc +tggcgaccgg cgcacgggtg cgtaacgcgt atgcaaccta ccctttacag ggggatagcc +cgaggaaact cggattaata ccccatagtt tggatttttc gcatggaaga tttaataaag +ttctggcggt aaaggatggg catgcgtgac attagctagt tggagaggta acggctcacc +aaggctacga tgtctagggg tcctgagagg gaaaaccccc acactggtac tgagacacgg +accagactcc tacgggaggc agcagtgagg aatattggtc aatgggcgca agcctgaacc +agccatgccg cgtgcaggaa gacggcccta tgggttgtaa actgctttta tataggaaga +attatattac gtgtaataag ttgacagtac tatatgaata agcaccggct aactccgtg diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs.nwk --- 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diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs.otu.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.otu.csv Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,201 @@ +OTU 16SAMP-747 16S-AMP-1168 16SAMP-4603 16S-AMP-1149 16SAMP-537 16S-AMP-1114 16SAMP-3893 16SAMP-703 16SAMP-638 16SAMP-2611 16S-AMP-1100 16SAMP-608 16SAMP-636 16SAMP-13288 16SAMP-719 16S-AMP-1098 16SAMP-536 16S-AMP-1169 16SAMP-635 16SAMP-637 16SAMP-717 16S-AMP-1148 16SAMP-735 16SAMP-729 16SAMP-738 16SAMP-2613 16SAMP-10925 16SAMP-3913 16SAMP-716 16SAMP-726 16SAMP-728 16SAMP-625 16SAMP-736 16SAMP-13281 16SAMP-626 16SAMP-704 16SAMP-2612 16SAMP-746 16SAMP-522 16SAMP-516 16S-AMP-1170 16S-AMP-1099 16SAMP-10932 16SAMP-740 16SAMP-739 16SAMP-4597 16SAMP-535 16SAMP-3941 16SAMP-3953 16SAMP-720 16SAMP-705 16SAMP-10907 16SAMP-538 16SAMP-10911 16SAMP-737 16SAMP-4591 16SAMP-745 16SAMP-706 16SAMP-3946 16S-AMP-1101 16SAMP-10896 16SAMP-10891 16SAMP-748 16SAMP-725 16SAMP-730 16S-AMP-1107 16SAMP-727 +OTU_95 1 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f__Lactobacillaceae g__Lactobacillus s__ OTU_13504 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_173 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Lachnospiraceae OTU_11006 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_9035 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales OTU_8165 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Ramlibacter s__ OTU_1707 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__TK34 g__ s__ OTU_4805 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Bradyrhizobiaceae g__Bosea s__ OTU_7801 +k__Bacteria p__Hydrogenedentes c__ o__ f__ g__ s__ OTU_6106 +k__Bacteria p__Synergistetes c__Synergistia o__Synergistales f__Synergistaceae g__uncultured s__ OTU_9681 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Desulfobacterales f__Desulfobulbaceae g__Desulfobulbus s__ OTU_4039 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Gaiellales f__BVA77 g__ s__ OTU_4338 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae OTU_1634 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__env.OPS 17 g__ s__ OTU_684 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales OTU_496 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Nocardioidaceae g__Nocardioides s__ OTU_3941 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__DUNssu044 g__ s__ OTU_4193 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Prevotellaceae g__uncultured s__ OTU_9455 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XII g__Fusibacter s__ OTU_7842 +k__Bacteria p__Planctomycetes c__Phycisphaerae o__Phycisphaerales f__Phycisphaeraceae g__uncultured s__ OTU_13494 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__uncultured s__ OTU_1285 +k__Bacteria p__Chloroflexi c__WCHB1-50 o__WCHB1-50 f__WCHB1-50 g__SM1F10 s__ OTU_132 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae g__Hyphomicrobium s__ OTU_10641 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Rhodocyclales f__Rhodocyclaceae OTU_236 +k__Bacteria p__Deinococcus-Thermus c__Deinococci o__Thermales f__Thermaceae g__Meiothermus s__ OTU_462 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae g__Hyphomicrobium s__ OTU_161 +k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Carnobacteriaceae g__Trichococcus s__ OTU_13660 +k__Bacteria p__Chlorobi c__Ignavibacteria o__Ignavibacteriales f__PHOS-HE36 g__oca15 s__ OTU_9412 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales OTU_7504 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Simplicispira s__ OTU_318 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XIII OTU_7070 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae OTU_288 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__Sandaracinaceae g__Sandaracinus s__ OTU_2415 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Bdellovibrionales f__Bdellovibrionaceae g__OM27 clade s__ OTU_95 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__Mitochondria g__ s__ OTU_3982 +k__Bacteria p__Verrucomicrobia c__Verrucomicrobiae o__Verrucomicrobiales f__Verrucomicrobiaceae g__uncultured s__ OTU_4278 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae OTU_2887 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae g__uncultured s__ OTU_5684 +k__Bacteria OTU_4220 +k__Bacteria OTU_7051 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Collinsella s__ OTU_11398 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Nordellaceae g__MNG7 s__ OTU_4669 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae g__Roseomonas s__ OTU_4697 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae OTU_6765 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__Pirellula s__ OTU_1066 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__uncultured s__ OTU_5907 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Clostridium sensu stricto 1 s__ OTU_4933 +k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Lactobacillaceae g__Lactobacillus s__ OTU_8885 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__Candidatus Defluviifilum s__ OTU_4226 +k__Bacteria p__Proteobacteria c__TA18 o__ f__ g__ s__ OTU_1821 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Peptostreptococcaceae g__Acetoanaerobium s__ OTU_1794 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__env.OPS 17 g__ s__ OTU_3925 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae OTU_3353 +k__Bacteria p__GOUTA4 c__ o__ f__ g__ s__ OTU_7163 +k__Bacteria p__Acidobacteria c__Acidobacteria o__Subgroup 6 f__ g__ s__ OTU_541 +k__Bacteria p__Bacteroidetes c__Flavobacteriia o__Flavobacteriales f__Flavobacteriaceae g__Flavobacterium s__ OTU_1521 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__Holosporaceae g__uncultured s__ OTU_14421 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_2972 +k__Bacteria p__Nitrospirae c__Nitrospira o__Nitrospirales f__Nitrospiraceae g__Nitrospira s__sublineage I OTU_8291 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__uncultured s__ OTU_289 +k__Bacteria p__WCHB1-60 c__ o__ f__ g__ s__ OTU_1306 +k__Bacteria p__Planctomycetes c__Phycisphaerae o__WD2101 soil group f__ g__ s__ OTU_4839 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Propioniciclava s__ OTU_11689 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Porphyromonadaceae g__Parabacteroides s__ OTU_12665 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae OTU_2085 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_448 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinomycetaceae g__Actinomyces s__ OTU_6935 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Nocardioidaceae g__Aeromicrobium s__ OTU_190 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XI g__uncultured s__ OTU_4458 +k__Bacteria OTU_927 +k__Bacteria p__Chlorobi c__Chlorobia o__Chlorobiales f__Chlorobiaceae g__ s__ OTU_5113 +k__Bacteria p__Bacteroidetes c__Flavobacteriia o__Flavobacteriales f__NS9 marine group g__ s__ OTU_1875 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Clostridium sensu stricto 6 s__ OTU_9228 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Rhodospirillales Incertae Sedis g__Reyranella s__ OTU_1845 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Proteiniclasticum s__ OTU_6255 +k__Bacteria p__Acidobacteria c__Holophagae o__Subgroup 10 f__ABS-19 g__B1-K1A-105 s__ OTU_1479 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Prevotellaceae g__Prevotellaceae UCG-004 s__ OTU_14146 +k__Bacteria p__Elusimicrobia c__Elusimicrobia o__Lineage IIb f__ g__ s__ OTU_6507 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__Haliangiaceae g__Haliangium s__ OTU_7542 +k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Bacillaceae g__Ureibacillus s__ OTU_13718 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__ g__ s__ OTU_4593 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminococcus 2 s__ OTU_2343 +k__Bacteria OTU_8708 +k__Bacteria p__SM2F11 c__ o__ f__ g__ s__ OTU_2677 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales OTU_9665 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__CYCU-0281 s__ OTU_81 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__Parafilimonas s__ OTU_6422 +k__Bacteria p__Proteobacteria c__TA18 o__ f__ g__ s__ OTU_1612 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinomycetaceae g__Actinomyces s__ OTU_3216 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Aestuariimicrobium s__ OTU_9248 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_5187 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminiclostridium 1 s__ OTU_7882 +k__Bacteria p__Saccharibacteria c__ o__ f__ g__ s__ OTU_1543 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Microbacteriaceae g__Diaminobutyricimonas s__ OTU_11775 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__K2-78 s__ OTU_233 +k__Bacteria p__Firmicutes c__Erysipelotrichia o__Erysipelotrichales f__Erysipelotrichaceae g__Erysipelatoclostridium s__ OTU_4015 +k__Bacteria p__TM6 c__ o__ f__ g__ s__ OTU_8260 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales f__Acidimicrobiaceae g__CL500-29 marine group s__ OTU_9548 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Bacteroidaceae g__Bacteroides s__ OTU_5643 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Tessaracoccus s__ OTU_1586 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Corynebacteriales f__Nocardiaceae g__Gordonia s__ OTU_3782 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Senegalimassilia s__ OTU_2934 +k__Bacteria p__Armatimonadetes c__ o__ f__ g__ s__ OTU_14570 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Atopobium s__ OTU_11781 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Porphyromonadaceae g__Proteiniphilum s__ OTU_3700 +k__Bacteria OTU_6318 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Rhodocyclales f__Rhodocyclaceae g__Uliginosibacterium s__ OTU_2148 +k__Bacteria p__Chloroflexi c__WCHB1-50 o__WCHB1-50 f__WCHB1-50 g__WCHB1-50 s__ OTU_2244 +k__Bacteria p__Bacteroidetes c__BSV13 o__ f__ g__ s__ OTU_7867 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__K2-78 s__ OTU_14248 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__bacteriap25 g__ s__ OTU_12704 +k__Bacteria p__Chloroflexi c__Thermomicrobia o__JG30-KF-CM45 f__ g__ s__ OTU_364 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Christensenellaceae g__Christensenellaceae R-7 group s__ OTU_8245 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae OTU_10847 +k__Bacteria p__Acidobacteria c__Holophagae o__Holophagales f__Holophagaceae OTU_1151 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Intrasporangiaceae g__Fodinibacter s__ OTU_1998 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Rhodospirillaceae g__Defluviicoccus s__cluster I OTU_10321 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Acidovorax s__ OTU_4721 +k__Bacteria p__Verrucomicrobia c__OPB35 soil group o__ f__ g__ s__ OTU_6237 +k__Bacteria p__Saccharibacteria c__Unknown Class o__FW73 OTU_1972 +k__Bacteria p__Elusimicrobia c__Elusimicrobia o__Lineage IIb f__ g__ s__ OTU_11364 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Beutenbergiaceae g__Salana s__ OTU_1816 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Propionimicrobium s__ OTU_14842 +k__Bacteria p__Fusobacteria c__Fusobacteriia o__Fusobacteriales f__Leptotrichiaceae g__uncultured s__ OTU_6533 +k__Bacteria p__Tenericutes c__Mollicutes o__Mollicutes RF9 f__ g__ s__ OTU_8887 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__Litorilinea s__ OTU_12690 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Proteiniclasticum s__ OTU_3097 +k__Bacteria p__Firmicutes c__Erysipelotrichia o__Erysipelotrichales f__Erysipelotrichaceae g__Faecalitalea s__ OTU_3257 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae g__uncultured s__ OTU_3161 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__ s__ OTU_11903 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminiclostridium 5 s__ OTU_7508 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__ g__ s__ OTU_10969 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__Oligoflexaceae g__ s__ OTU_1801 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Neisseriales f__Neisseriaceae g__Rivicola s__ OTU_3488 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__GR-WP33-30 f__ g__ s__ OTU_933 +k__Bacteria p__Lentisphaerae c__PBS-III-20 o__ f__ g__ s__ OTU_3824 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__AKIW1012 g__ s__ OTU_777 +k__Bacteria p__TM6 c__ o__ f__ g__ s__ OTU_3169 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__[Eubacterium] coprostanoligenes group s__ OTU_12385 +k__Bacteria p__Armatimonadetes c__ o__ f__ g__ s__ OTU_1496 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales f__Microthricaceae g__ s__ OTU_11294 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__Lewinella s__ OTU_1968 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales OTU_8832 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria OTU_8652 +k__Bacteria p__Chlorobi c__Chlorobia o__Chlorobiales f__OPB56 g__ s__ OTU_13621 +k__Bacteria p__Microgenomates c__ o__ f__ g__ s__ OTU_3043 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae OTU_10760 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Bacteroidaceae g__Bacteroides s__ OTU_14173 +k__Bacteria p__Cyanobacteria c__Chloroplast o__ f__ g__ s__ OTU_10746 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_284 +k__Bacteria p__Saccharibacteria c__ o__ f__ g__ s__ OTU_5049 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae g__uncultured s__ OTU_2397 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__uncultured s__ OTU_2913 +k__Bacteria p__Bacteroidetes OTU_9512 diff -r 000000000000 -r 65cc862ec3c4 test-data/AalborgWWTPs.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.tsv Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,68 @@ +SampleID Plant Date Year Period +16SAMP-747 16SAMP-747 Aalborg East 2010-02-04 2010 Winter +16S-AMP-1168 16S-AMP-1168 Aalborg West 2013-05-06 2013 Spring +16SAMP-4603 16SAMP-4603 Aalborg East 2014-08-19 2014 Summer +16S-AMP-1149 16S-AMP-1149 Aalborg East 2013-10-28 2013 Fall +16SAMP-537 16SAMP-537 Aalborg West 2010-08-19 2010 Summer +16S-AMP-1114 16S-AMP-1114 Aalborg West 2013-02-04 2013 Winter +16SAMP-3893 16SAMP-3893 Aalborg East 2014-02-06 2014 Winter +16SAMP-703 16SAMP-703 Aalborg East 2006-02-04 2006 Winter +16SAMP-638 16SAMP-638 Aalborg East 2012-10-28 2012 Fall +16SAMP-2611 16SAMP-2611 Aalborg East 2011-02-04 2011 Winter +16S-AMP-1100 16S-AMP-1100 Aalborg West 2012-08-19 2012 Summer +16SAMP-608 16SAMP-608 Aalborg East 2011-10-28 2011 Fall +16SAMP-636 16SAMP-636 Aalborg East 2012-05-06 2012 Spring +16SAMP-13288 16SAMP-13288 Aalborg West 2015-02-09 2015 Winter +16SAMP-719 16SAMP-719 Aalborg East 2007-08-19 2007 Summer +16S-AMP-1098 16S-AMP-1098 Aalborg West 2012-02-04 2012 Winter +16SAMP-536 16SAMP-536 Aalborg West 2010-05-06 2010 Spring +16S-AMP-1169 16S-AMP-1169 Aalborg West 2013-08-19 2013 Summer +16SAMP-635 16SAMP-635 Aalborg East 2012-02-04 2012 Winter +16SAMP-637 16SAMP-637 Aalborg East 2012-08-19 2012 Summer +16SAMP-717 16SAMP-717 Aalborg East 2007-02-04 2007 Winter +16S-AMP-1148 16S-AMP-1148 Aalborg East 2013-08-19 2013 Summer +16SAMP-735 16SAMP-735 Aalborg West 2008-05-06 2008 Spring +16SAMP-729 16SAMP-729 Aalborg East 2008-08-19 2008 Summer +16SAMP-738 16SAMP-738 Aalborg East 2009-02-04 2009 Winter +16SAMP-2613 16SAMP-2613 Aalborg West 2011-08-19 2011 Summer +16SAMP-10925 16SAMP-10925 Aalborg East 2015-10-27 2015 Fall +16SAMP-3913 16SAMP-3913 Aalborg East 2014-07-03 2014 Summer +16SAMP-716 16SAMP-716 Aalborg West 2006-02-04 2006 Winter +16SAMP-726 16SAMP-726 Aalborg West 2007-08-19 2007 Summer +16SAMP-728 16SAMP-728 Aalborg East 2008-05-06 2008 Spring +16SAMP-625 16SAMP-625 Aalborg West 2011-02-04 2011 Winter +16SAMP-736 16SAMP-736 Aalborg West 2008-08-19 2008 Summer +16SAMP-13281 16SAMP-13281 Aalborg East 2015-02-10 2015 Winter +16SAMP-626 16SAMP-626 Aalborg West 2011-10-28 2011 Fall +16SAMP-704 16SAMP-704 Aalborg East 2006-05-06 2006 Spring +16SAMP-2612 16SAMP-2612 Aalborg East 2011-08-19 2011 Summer +16SAMP-746 16SAMP-746 Aalborg West 2009-05-06 2009 Spring +16SAMP-522 16SAMP-522 Aalborg East 2010-10-28 2010 Fall +16SAMP-516 16SAMP-516 Aalborg West 2009-10-28 2009 Fall +16S-AMP-1170 16S-AMP-1170 Aalborg West 2013-10-28 2013 Fall +16S-AMP-1099 16S-AMP-1099 Aalborg West 2012-05-06 2012 Spring +16SAMP-10932 16SAMP-10932 Aalborg West 2015-10-27 2015 Fall +16SAMP-740 16SAMP-740 Aalborg East 2009-10-28 2009 Fall +16SAMP-739 16SAMP-739 Aalborg East 2009-05-06 2009 Spring +16SAMP-4597 16SAMP-4597 Aalborg West 2014-05-05 2014 Spring +16SAMP-535 16SAMP-535 Aalborg West 2010-02-04 2010 Winter +16SAMP-3941 16SAMP-3941 Aalborg West 2014-08-18 2014 Summer +16SAMP-3953 16SAMP-3953 Aalborg West 2014-11-12 2014 Fall +16SAMP-720 16SAMP-720 Aalborg East 2007-10-28 2007 Fall +16SAMP-705 16SAMP-705 Aalborg East 2006-08-19 2006 Summer +16SAMP-10907 16SAMP-10907 Aalborg East 2015-08-24 2015 Summer +16SAMP-538 16SAMP-538 Aalborg West 2010-10-28 2010 Fall +16SAMP-10911 16SAMP-10911 Aalborg West 2015-08-24 2015 Summer +16SAMP-737 16SAMP-737 Aalborg West 2008-10-28 2008 Fall +16SAMP-4591 16SAMP-4591 Aalborg West 2014-02-04 2014 Winter +16SAMP-745 16SAMP-745 Aalborg West 2009-02-04 2009 Winter +16SAMP-706 16SAMP-706 Aalborg East 2006-10-28 2006 Fall +16SAMP-3946 16SAMP-3946 Aalborg East 2014-11-13 2014 Fall +16S-AMP-1101 16S-AMP-1101 Aalborg West 2012-10-28 2012 Fall +16SAMP-10896 16SAMP-10896 Aalborg West 2015-05-04 2015 Spring +16SAMP-10891 16SAMP-10891 Aalborg East 2015-05-04 2015 Spring +16SAMP-748 16SAMP-748 Aalborg East 2010-05-06 2010 Spring +16SAMP-725 16SAMP-725 Aalborg West 2007-02-04 2007 Winter +16SAMP-730 16SAMP-730 Aalborg East 2008-10-28 2008 Fall +16S-AMP-1107 16S-AMP-1107 Aalborg East 2013-05-06 2013 Spring +16SAMP-727 16SAMP-727 Aalborg East 2008-02-04 2008 Winter diff -r 000000000000 -r 65cc862ec3c4 test-data/generate.R --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/generate.R Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,10 @@ +library(ampvis2) + +# subset taxa using 200 random OTUs +aalborgwwtps <- amp_subset_taxa(AalborgWWTPs, tax_vector = sample(AalborgWWTPs$tax$OTU, 200)) + +ape::write.tree(aalborgwwtps$tree, "AalborgWWTPs.nwk") +amp_export_fasta(aalborgwwtps, "AalborgWWTPs.fa", tax = F) +amp_export_otutable(aalborgwwtps, "AalborgWWTPs.otu") +write.table(aalborgwwtps$tax, file = "AalborgWWTPs.tax", quote = F, sep = "\t", row.names = F) +write.table(aalborgwwtps$metadata, file = "AalborgWWTPs.tsv", quote = F, sep = "\t") diff -r 000000000000 -r 65cc862ec3c4 test-data/generate.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/generate.sh Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,5 @@ + +Rscript generate.R + +sed -i -e 's/"//g' AalborgWWTPs.tax + diff -r 000000000000 -r 65cc862ec3c4 test-data/min_sparse_otu_table_hdf5.biom Binary file test-data/min_sparse_otu_table_hdf5.biom has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/min_sparse_otu_table_hdf5.rds Binary file test-data/min_sparse_otu_table_hdf5.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/rich-dense.biom --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rich-dense.biom Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,55 @@ +{ + "id":null, + "format": "Biological Observation Matrix 0.9.1-dev", + "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html", + "type": "OTU table", + "generated_by": "QIIME revision 1.4.0-dev", + "date": "2011-12-19T19:00:00", + "rows":[ + {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, + {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, + {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, + {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, + {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} + ], + "columns":[ + {"id":"Sample1", "metadata":{ + "BarcodeSequence":"CGCTTATCGAGA", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample2", "metadata":{ + "BarcodeSequence":"CATACCAGTAGC", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample3", "metadata":{ + "BarcodeSequence":"CTCTCTACCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample4", "metadata":{ + "BarcodeSequence":"CTCTCGGCCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample5", "metadata":{ + "BarcodeSequence":"CTCTCTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample6", "metadata":{ + "BarcodeSequence":"CTAACTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}} + ], + "matrix_type": "dense", + "matrix_element_type": "int", + "shape": [5,6], + "data": [[0,0,1,0,0,0], + [5,1,0,2,3,1], + [0,0,1,4,2,0], + [2,1,1,0,0,1], + [0,1,1,0,0,0]] +} diff -r 000000000000 -r 65cc862ec3c4 test-data/rich-dense.rds Binary file test-data/rich-dense.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/rich-sparse.biom --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rich-sparse.biom Mon Apr 04 10:23:15 2022 +0000 @@ -0,0 +1,66 @@ +{ + "id":"w00asdt", + "format": "1.0.0", + "format_url": "http://biom-format.org", + "type": "OTU table", + "generated_by": "QIIME revision XYZ", + "date": "2011-12-19T19:00:00", + "rows":[ + {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, + {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, + {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, + {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, + {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} + ], + "columns":[ + {"id":"Sample1", "metadata":{ + "BarcodeSequence":"CGCTTATCGAGA", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample2", "metadata":{ + "BarcodeSequence":"CATACCAGTAGC", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample3", "metadata":{ + "BarcodeSequence":"CTCTCTACCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample4", "metadata":{ + "BarcodeSequence":"CTCTCGGCCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample5", "metadata":{ + "BarcodeSequence":"CTCTCTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample6", "metadata":{ + "BarcodeSequence":"CTAACTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}} + ], + "matrix_type": "sparse", + "matrix_element_type": "int", + "shape": [5, 6], + "data":[[0,2,1], + [1,0,5], + [1,1,1], + [1,3,2], + [1,4,3], + [1,5,1], + [2,2,1], + [2,3,4], + [2,5,2], + [3,0,2], + [3,1,1], + [3,2,1], + [3,5,1], + [4,1,1], + [4,2,1] + ] + } diff -r 000000000000 -r 65cc862ec3c4 test-data/rich-sparse.rds Binary file test-data/rich-sparse.rds has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/rich_sparse_otu_table_hdf5.biom Binary file test-data/rich_sparse_otu_table_hdf5.biom has changed diff -r 000000000000 -r 65cc862ec3c4 test-data/rich_sparse_otu_table_hdf5.rds Binary file test-data/rich_sparse_otu_table_hdf5.rds has changed