Mercurial > repos > iuc > ampvis2_subset_taxa

comparison subset_taxa.xml @ 2:1332619ad9ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 09b56ef3e09ad6c5923c88616fea5cbd77d87616
author iuc
date Mon, 18 Dec 2023 09:44:32 +0000
parents 8cb9c749b2fc
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1:70a98af91147 2:1332619ad9ec
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70 Subsets the data in ampvis2 objects based on taxonomy and returns the subsetted object. 70 Subsets the data in ampvis2 objects based on taxonomy and returns the subsetted object.
71 71
72 The Galaxy tool calls the `amp_subset_taxa 72 The Galaxy tool calls the `amp_subset_taxa
73 <https://madsalbertsen.github.io/ampvis2/reference/amp_subset_taxa.html>`_ function 73 <https://kasperskytte.github.io/ampvis2/reference/amp_filter_taxa.html>`_ function
74 of the ampvis2 package. 74 of the ampvis2 package.
75 75
76 The taxonomy subset is done by providing a tax_vector of taxa names which are 76 The taxonomy subset is done by providing a tax_vector of taxa names which are
77 then matched to the taxonomy table, where all other taxa not matching the 77 then matched to the taxonomy table, where all other taxa not matching the
78 "Taxa to keep" (``tax_vector``) are removed. If "Remove" is enabled, then the 78 "Taxa to keep" (``tax_vector``) are removed. If "Remove" is enabled, then the