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comparison data_manager/data_manager_build_amrfinderplus.xml @ 3:dfa1eb2941b0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_build_amrfinderplus commit 45dbbf06a59df43da2c321c272de11cc41e17d43
author iuc
date Sun, 23 Nov 2025 12:21:34 +0000
parents a5921c09b7b7
children
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equal deleted inserted replaced
2:a5921c09b7b7 3:dfa1eb2941b0
15 $test_data_manager 15 $test_data_manager
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <conditional name="database_list"> 18 <conditional name="database_list">
19 <param name="database_version_select" type="select" label="Database version"> 19 <param name="database_version_select" type="select" label="Database version">
20 <option value="4.0">V4.0</option>
20 <option value="3.12">V3.12</option> 21 <option value="3.12">V3.12</option>
21 </param> 22 </param>
23 <when value="4.0">
24 <param name="database_date_select" type="select" label="Date version">
25 <option value="2025-07-16.1">2025-07-16.1</option>
26 </param>
27 </when>
22 <when value="3.12"> 28 <when value="3.12">
23 <param name="database_date_select" type="select" label="Date version"> 29 <param name="database_date_select" type="select" label="Date version">
24 <option value="2024-05-02.2">2024-05-02.2</option> 30 <option value="2024-05-02.2">2024-05-02.2</option>
25 <option value="2024-01-31.1">2024-01-31.1</option> 31 <option value="2024-01-31.1">2024-01-31.1</option>
26 </param> 32 </param>
27 </when> 33 </when>
28 </conditional> 34 </conditional>
29 <param name="test_data_manager" type="hidden" value=""/> 35 <param name="test_data_manager" type="hidden" value=""/>
30 </inputs> 36 </inputs>
31 <outputs> 37 <outputs>
32 <data name="output_file" format="data_manager_json"/> 38 <data name="output_file" format="data_manager_json"/>
33 </outputs> 39 </outputs>
34 <tests> 40 <tests>
38 <output name="output_file"> 44 <output name="output_file">
39 <assert_contents> 45 <assert_contents>
40 <has_n_lines n="1"/> 46 <has_n_lines n="1"/>
41 <has_text text="{&quot;data_tables&quot;"/> 47 <has_text text="{&quot;data_tables&quot;"/>
42 <has_text text="amrfinderplus_versioned_database"/> 48 <has_text text="amrfinderplus_versioned_database"/>
43 <has_text text='"db_version": "3.12"'/>
44 </assert_contents> 49 </assert_contents>
45 </output> 50 </output>
46 </test> 51 </test>
47 <!-- Test_2 DB 3.12 2024-01-31.1 --> 52 <!-- Test_2 DB 3.12 2024-01-31.1 -->
48 <test expect_num_outputs="1"> 53 <test expect_num_outputs="1">
59 <has_text text='"name": "V3.12-2024-01-31.1"'/> 64 <has_text text='"name": "V3.12-2024-01-31.1"'/>
60 <has_text text='"db_version": "3.12"'/> 65 <has_text text='"db_version": "3.12"'/>
61 </assert_contents> 66 </assert_contents>
62 </output> 67 </output>
63 </test> 68 </test>
69 <!-- Test_3 DB 4.0 2025-07-16.1 -->
70 <test expect_num_outputs="1">
71 <param name="test_data_manager" value="--test"/>
72 <conditional name="database_list">
73 <param name="database_version_select" value="4.0"/>
74 <param name="database_date_select" value="2025-07-16.1"/>
75 </conditional>
76 <output name="output_file">
77 <assert_contents>
78 <has_n_lines n="1"/>
79 <has_text text="{&quot;data_tables&quot;"/>
80 <has_text text="amrfinderplus_versioned_database"/>
81 <has_text text='"name": "V4.0-2025-07-16.1"'/>
82 <has_text text='"db_version": "4.0"'/>
83 </assert_contents>
84 </output>
85 </test>
64 </tests> 86 </tests>
65 <help><![CDATA[ 87 <help><![CDATA[
66 Download AMRFinderPlus database from the NCBI server 88 Download AMRFinderPlus database from the NCBI server
67 ]]></help> 89 ]]></help>
68 <citations> 90 <citations>