Mercurial > repos > iuc > amrfinderplus_data_manager_build

diff data_manager/data_manager_build_amrfinderplus.xml @ 3:dfa1eb2941b0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_build_amrfinderplus commit 45dbbf06a59df43da2c321c272de11cc41e17d43
author iuc
date Sun, 23 Nov 2025 12:21:34 +0000
parents a5921c09b7b7
children
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--- a/data_manager/data_manager_build_amrfinderplus.xml	Thu May 30 13:06:37 2024 +0000
+++ b/data_manager/data_manager_build_amrfinderplus.xml	Sun Nov 23 12:21:34 2025 +0000
@@ -17,8 +17,14 @@
     <inputs>
         <conditional name="database_list">
             <param name="database_version_select" type="select" label="Database version">
+                <option value="4.0">V4.0</option>
                 <option value="3.12">V3.12</option>
             </param>
+            <when value="4.0">
+                <param name="database_date_select" type="select" label="Date version">
+                    <option value="2025-07-16.1">2025-07-16.1</option>
+                </param>
+            </when>
             <when value="3.12">
                 <param name="database_date_select" type="select" label="Date version">
                     <option value="2024-05-02.2">2024-05-02.2</option>
@@ -26,7 +32,7 @@
                 </param>
             </when>
         </conditional>
-         <param name="test_data_manager" type="hidden" value=""/>
+        <param name="test_data_manager" type="hidden" value=""/>
     </inputs>
     <outputs>
         <data name="output_file" format="data_manager_json"/>
@@ -40,7 +46,6 @@
                     <has_n_lines n="1"/>
                     <has_text text="{&quot;data_tables&quot;"/>
                     <has_text text="amrfinderplus_versioned_database"/>
-                    <has_text text='"db_version": "3.12"'/>
                 </assert_contents>
             </output>
         </test>
@@ -61,6 +66,23 @@
                 </assert_contents>
             </output>
         </test>
+        <!-- Test_3 DB 4.0 2025-07-16.1 -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test"/>
+            <conditional name="database_list">
+                <param name="database_version_select" value="4.0"/>
+                <param name="database_date_select" value="2025-07-16.1"/>
+            </conditional>
+            <output name="output_file">
+                <assert_contents>
+                    <has_n_lines n="1"/>
+                    <has_text text="{&quot;data_tables&quot;"/>
+                    <has_text text="amrfinderplus_versioned_database"/>
+                    <has_text text='"name": "V4.0-2025-07-16.1"'/>
+                    <has_text text='"db_version": "4.0"'/>
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help><![CDATA[
 Download AMRFinderPlus database from the NCBI server