Mercurial > repos > iuc > anndata_import
comparison macros.xml @ 10:55e35e9203cf draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 58ea92c594280588f6045093d77af6d7d885185d"
author | iuc |
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date | Sat, 07 May 2022 19:54:26 +0000 |
parents | ae1e5d9d8972 |
children | fb9e030ffae4 |
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44 AnnData stores observations (samples) of variables (features) in the rows of a matrix. This is the convention of the modern classics | 44 AnnData stores observations (samples) of variables (features) in the rows of a matrix. This is the convention of the modern classics |
45 of statistics (`Hastie et al., 2009 <https://web.stanford.edu/~hastie/ElemStatLearn/>`__) and machine learning (Murphy, 2012), the convention of dataframes both in R and Python and the established statistics | 45 of statistics (`Hastie et al., 2009 <https://web.stanford.edu/~hastie/ElemStatLearn/>`__) and machine learning (Murphy, 2012), the convention of dataframes both in R and Python and the established statistics |
46 and machine learning packages in Python (statsmodels, scikit-learn). | 46 and machine learning packages in Python (statsmodels, scikit-learn). |
47 | 47 |
48 More details on the `AnnData documentation | 48 More details on the `AnnData documentation |
49 <https://anndata.readthedocs.io/en/latest/anndata.AnnData.html>`__ | 49 <https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html>`__ |
50 | 50 |
51 | 51 |
52 **Loom data** | 52 **Loom data** |
53 | 53 |
54 Loom files are an efficient file format for very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations, and sparse graph objects. | 54 Loom files are an efficient file format for very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations, and sparse graph objects. |