# HG changeset patch
# User iuc
# Date 1731103149 0
# Node ID 6f143dfe902a5d1d66a82914de405ecc455f2249
# Parent  d330b3082107b5842b80b8d65ebb455b6b62749a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit c1d84c1850c53deccc384de3960d2cec37bb2869

diff -r d330b3082107 -r 6f143dfe902a import.xml
--- a/import.xml	Sat Sep 14 19:58:24 2024 +0000
+++ b/import.xml	Fri Nov 08 21:59:09 2024 +0000
@@ -12,6 +12,7 @@
             <param name="gex_only" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Keep only 'Gene Expression' data and ignore other feature types?"/>
         </xml>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements">
         <requirement type="package" version="1.10.2">scanpy</requirement>
     </expand>
@@ -279,10 +280,10 @@
 
 This tool creates an AnnData from several input types:
 
-- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_loom.html>`__)
-- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_csv.html>`__)
-- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_mtx.html>`__)
-- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_umi_tools.html>`__)
+- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_loom.html>`__)
+- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_csv.html>`__)
+- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_mtx.html>`__)
+- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_umi_tools.html>`__)
 
 @HELP@
     ]]></help>
diff -r d330b3082107 -r 6f143dfe902a macros.xml
--- a/macros.xml	Sat Sep 14 19:58:24 2024 +0000
+++ b/macros.xml	Fri Nov 08 21:59:09 2024 +0000
@@ -78,4 +78,9 @@
             </valid>
        </sanitizer>
     </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">anndata</xref>
+        </xrefs>
+    </xml>
 </macros>