Mercurial > repos > iuc > anndata_manipulate

comparison macros.xml @ 13:7e8c677a7b71 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 67b3808b56df343798263ff0c905df8cb789edfa
author iuc
date Sat, 14 Sep 2024 19:58:00 +0000
parents ed4996a16f7f
children c4209ea387d4
comparison
equal deleted inserted replaced
12:ed4996a16f7f 13:7e8c677a7b71
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.10.3</token> 2 <token name="@TOOL_VERSION@">0.10.9</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">21.09</token>
4 <xml name="requirements"> 5 <xml name="requirements">
5 <requirements> 6 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">anndata</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">anndata</requirement>
7 <requirement type="package" version="3.0.6">loompy</requirement> 8 <requirement type="package" version="3.0.6">loompy</requirement>
8 <yield /> 9 <yield />
17 <version_command><![CDATA[python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"]]></version_command> 18 <version_command><![CDATA[python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"]]></version_command>
18 </xml> 19 </xml>
19 <token name="@CMD@"><![CDATA[ 20 <token name="@CMD@"><![CDATA[
20 cat '$script_file' && 21 cat '$script_file' &&
21 python '$script_file' 22 python '$script_file'
22 ]]>
23 </token>
24 <token name="@LOOMCMD@"><![CDATA[
25 mkdir ./output &&
26 mkdir ./attributes &&
27 python '$__tool_directory__/loompy_to_tsv.py' -f '${hd5_format.input}'
28 ]]> 23 ]]>
29 </token> 24 </token>
30 <token name="@CMD_imports@"><![CDATA[ 25 <token name="@CMD_imports@"><![CDATA[
31 import anndata as ad 26 import anndata as ad
32 ]]> 27 ]]>
74 <when value="specified"> 69 <when value="specified">
75 <param name="list" type="text" value="" label="List of comma-separated indices to return"/> 70 <param name="list" type="text" value="" label="List of comma-separated indices to return"/>
76 </when> 71 </when>
77 </conditional> 72 </conditional>
78 </xml> 73 </xml>
74 <xml name="sanitize_query" token_validinitial="string.printable">
75 <sanitizer>
76 <valid initial="@VALIDINITIAL@">
77 <remove value="&apos;" />
78 </valid>
79 </sanitizer>
80 </xml>
79 </macros> 81 </macros>