Mercurial > repos > iuc > anndata_manipulate

diff manipulate.xml @ 17:e6a8d5fdca85 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/anndata commit 7511ac8af2d638d0ad54f196b5ab3657c7577aa5
author iuc
date Wed, 10 Dec 2025 17:01:48 +0000
parents d1e49c3c0aa2
children
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--- a/manipulate.xml	Sat Mar 29 07:37:00 2025 +0000
+++ b/manipulate.xml	Wed Dec 10 17:01:48 2025 +0000
@@ -85,7 +85,7 @@
 
     #if $manipulate.var_keys
         #set $keys = [x.strip() for x in str($manipulate.var_keys).split(',')]
-adata.var = adata.vars.drop(columns=$keys)
+adata.var = adata.var.drop(columns=$keys)
     #end if
 
 #else if $manipulate.function == 'flag_genes'
@@ -590,10 +590,11 @@
         </test>
         <test expect_num_outputs="1">
             <!-- test 10 remove_keys -->
-            <param name="input" value="krumsiek11.h5ad"/>
+            <param name="input" value="flagged.h5ad"/>
             <conditional name="manipulate">
                 <param name="function" value="remove_keys"/>
                 <param name="obs_keys" value="cell_type"/>
+                <param name="var_keys" value="GF"/>
             </conditional>
             <assert_stdout>
                 <has_text_matching expression="500 × 11"/>
@@ -602,6 +603,7 @@
                 <assert_contents>
                     <has_h5_keys keys="uns/highlights"/>
                     <has_h5_keys keys="uns/iroot"/>
+                    <has_h5_keys keys="var/Gata_TF"/>
                 </assert_contents>
             </output>
         </test>