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comparison arriba.xml @ 6:45c2ec061cf9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 26aa67fb926f54dfda456f8e25b3c3a21aa63685
author iuc
date Wed, 25 Sep 2024 15:29:56 +0000
parents 01ccd366690d
children
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5:01ccd366690d 6:45c2ec061cf9
215 <help>Comma-/space-separated list of interesting contigs. 215 <help>Comma-/space-separated list of interesting contigs.
216 Fusions between genes on other contigs are ignored. Contigs can be specified with or without the prefix "chr". 216 Fusions between genes on other contigs are ignored. Contigs can be specified with or without the prefix "chr".
217 Asterisks (*) are treated as wild-cards. 217 Asterisks (*) are treated as wild-cards.
218 Default: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y AC_* NC_* 218 Default: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y AC_* NC_*
219 </help> 219 </help>
220 <validator type="regex" message="not a valid contig name">^((@GENOME_CONTIG@|@VIRAL_CONTIG@)([,\s]\s*(*@GENOME_CONTIG@|@VIRAL_CONTIG@))*)*</validator> 220 <validator type="regex" message="not a valid contig name">^((@GENOME_CONTIG@|@VIRAL_CONTIG@)([,\s]\s*(@GENOME_CONTIG@|@VIRAL_CONTIG@))*)$</validator>
221 </param> 221 </param>
222 <param name="viral_contigs" argument="-v" type="text" value="" optional="true" label="Comma/space-separated list of viral contigs"> 222 <param name="viral_contigs" argument="-v" type="text" value="" optional="true" label="Comma/space-separated list of viral contigs">
223 <help>Comma-/space-separated list of viral contigs for reporting of viral integration sites. 223 <help>Comma-/space-separated list of viral contigs for reporting of viral integration sites.
224 Asterisks (*) are treated as wild-cards. 224 Asterisks (*) are treated as wild-cards.
225 Default: AC_* NC_* 225 Default: AC_* NC_*