Mercurial > repos > iuc > arriba

diff test-data/fusions.tsv @ 0:a24ca22b906e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit b12158e6cc9b1b2bd6e7522dfc183e9055575823
author iuc
date Wed, 27 Jul 2022 11:24:44 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fusions.tsv	Wed Jul 27 11:24:44 2022 +0000
@@ -0,0 +1,2 @@
+#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers
+BCR	ABL1	+/+	+/+	22:230999	9:275100	CDS/splice-site	CDS/splice-site	translocation	1	3	0	3	8	low	in-frame	.	Bcr-Abl_oncoprotein_oligomerisation_domain(100%),C2_domain(100%),RhoGEF_domain(100%)|F-actin_binding(100%),Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%)	.	.	ENSG00000186716	ENSG00000097007	ENST00000305877	ENST00000372348	downstream	upstream	.	AGCTTCTCCCTGACATCCGTGGAGCTGCAGATGCTGACCAACTCGTGTGTGAAACTCCAGACTGTCCACAGCATTCCGCTGACCATCAATAAGGAAG___ATGATGAGTCTCCGGGGCTCTATGGGTTTCTGAATGTCATCGTCCACTCAGCCACTGGATTTAAGCAGAGTTCAA|AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGG	SFSLTSVELQMLTNSCVKLQTVHSIPLTINKEDDESPGLYGFLNVIVHSATGFKQSS|kALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLR	BCR-ABL1-4,BCR-ABL1-28,BCR-ABL1-60,BCR-ABL1-76